Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Botryllus schlosseri microbiome

PROVIDER: PRJNA1039848 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26838865_1.fastq.gz	Fastqsanger.gz
	SRR26838865_2.fastq.gz	Fastqsanger.gz
	SRR26838866_1.fastq.gz	Fastqsanger.gz
	SRR26838866_2.fastq.gz	Fastqsanger.gz
	SRR26838867_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Transcriptome Analysis of the Basal Chordate Botryllus schlosseri Reveals a Set of Genes Associated with Fertility

Project description:Background: Gonad differentiation is an essential function for all sexually reproducing species, and many aspects of these developmental processes are highly conserved among the metazoa. The colonial ascidian, Botryllus schlosseri is a chordate model organism which offers two unique traits that can be utilized to characterize the genes underlying germline development: a colonial life history and variable fertility. These properties allow individual genotypes to be isolated at different stages of fertility and gene expression can be characterized comprehensively. Results: Here we characterized the transcriptome of both fertile and infertile colonies throughout blastogenesis (asexual development) using differential expression analysis. We identified genes (as few as 7 and as many as 647) regulating fertility in Botryllus at each stage of blastogenesis. Several of these genes appear to drive gonad maturation, as they are expressed by follicle cells surrounding both testis and oocyte precursors. Spatial and temporal expression of differentially expressed genes was analyzed by in situ hybridization, confirming expression in developing gonads. Conclusion: We have identified several genes expressed in developing and mature gonads in B. schlosseri. Analysis of genes upregulated in fertile animals suggests a high level of conservation of the mechanisms regulating fertility between basal chordates and vertebrates. mRNA profiles of seven infertile stages from infertile Botryllus schlosseri colonies (each in triplicates) and seven stages of fertile Botryllus schlosseri colonies (each in triplicates) using Illumina deep sequencing and analyzed for differential expression between each stage.

2015-01-12 | E-GEOD-62112 | biostudies-arrayexpress

Botryllus schlosseri

Project description:Botryllus schlosseri overview

| PRJNA205603 | ENA

Botryllus schlosseri

Project description:Botryllus schlosseri aging clock atlas

| PRJNA682759 | ENA

Project description:RAD-seq of Botryllus schlosseri

| PRJNA810516 | ENA

Transcriptome Analysis of the Basal Chordate Botryllus schlosseri Reveals a Set of Genes Associated with Fertility

2015-01-12 | GSE62112 | GEO

Project description:RAD sequencing data of Botryllus schlosseri

| PRJNA392874 | ENA

Botryllus_schlosseri_multiomics

Project description:Environmental samples of dissected Botryllus schlosseri colonies collected on Avery Point, Connecticut, during spring 2023 Seawater samples collected at the marina on Avery Point, Connecticut, during spring 2023.

2024-11-06 | MSV000096313 | MassIVE

Botryllus schlosseri

Project description:Botryllus schlosseri gene expression profiling - Botsc_subtract transcriptome

| PRJNA584832 | ENA

MTBOTSCH

Project description:Botryllus schlosseri complete mitochondrial genome, isolate EA

| PRJEB5157 | ENA

Botryllus schlosseri

Project description:Botryllus schlosseri gene expression profiling - Botsc_normal transcriptome

| PRJNA584831 | ENA