Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The Ecology and Genotype Distribution of Three Opportunistic Pathogens in Sinks

PROVIDER: PRJNA1042964 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26886496_1.fastq.gz	Fastqsanger.gz
	SRR26886496_2.fastq.gz	Fastqsanger.gz
	SRR26886497_1.fastq.gz	Fastqsanger.gz
	SRR26886497_2.fastq.gz	Fastqsanger.gz
	SRR26886498_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 2439

Similar Datasets

Project description:Opportunistic premise plumbing pathogens from hospital sinks and clinical specimens

| PRJNA1138263 | ENA

Project description:Genotypic diversity of three opportunistic pathogens in NICU

| PRJNA729113 | ENA

The ubiquitous human skin commensal Staphylococcus hominis protects against opportunistic pathogens

Project description:Staphylococcus hominis is frequently isolated from human skin and we hypothesize that it may protect the cutaneous barrier from opportunistic pathogens. We determined that S. hominis makes six unique auto inducing peptide (AIP) signals that inhibit the major virulence factor accessory gene regulator (agr) quorum sensing system of Staphylococcus aureus. We solved and confirmed the structures of three novel AIP signals in conditioned media by mass spectrometry, then validated synthetic AIP activity against all S. aureus agr classes. Synthetic AIPs also inhibited the conserved agr system in a related species, Staphylococcus epidermidis. We determined the distribution of S. hominis agr types on healthy human skin and found S. hominis agr-I and agr-II were highly represented across subjects. Further, synthetic AIP-II was protective in vivo against S. aureus-associated dermonecrotic or epicutaneous injury. Together, these findings demonstrate that a ubiquitous colonizer of human skin has a fundamentally protective role against opportunistic damage.

2022-04-04 | GSE199818 | GEO

The microbiota in remote water supplies of Northern Australia

Project description:Opportunistic Pathogens and Large Microbial Diversity detected in Source-to-Distribution Drinking Water of three Remote Communities in Northern Australia

| PRJEB29497 | ENA

Project description:NPHL HAI and Opportunistic Pathogens

| PRJNA1107636 | ENA

Staphylococcus aureus

Project description:Opportunistic pathogens resistant to antibiotics

| PRJNA865540 | ENA

Project description:A real-world sink environmental hygiene intervention reduces antibiotic resistant organism burden and disrupts opportunistic premise plumbing pathogens in hospital sinks

| PRJNA1138264 | ENA

sncRNAs in E. faecalis V538

Project description:Small non coding RNA molecules (sncRNAs) are key mediators of virulence and stress inducible gene expressions in some pathogens. In this work we identify sncRNAs in the Gram positive opportunistic pathogen Enterococcus faecalis. Enterococcus faecalis. We characterized 11 sncRNAs by tiling microarray analysis, 5’ and 3’ RACE-PCR, and Northern blot analysis. Six sncRNAs were specifically expressed at exponential phase, two sncRNAs were observed at stationary phase, and three were detected during both phases. This is the first experimental genome-wide identification of sncRNAs in E. faecalis and provides impetus to the understanding of gene regulation in this important human pathogen.

2011-04-21 | GSE28741 | GEO

Project description:q20 nanopore sequencing of bacterial opportunistic pathogens

| PRJNA1010831 | ENA

C. elegans ADARs promote organismal survival to pathogen infection

Project description:Here, we reveal that the Caenorhabditis elegans ADAR proteins promote survival of animals exposed to several opportunistic human pathogens. Our data indicate that ADARs help maintain proper levels of cuticular collagen genes, which in turn affects defense of the nematode to these bacteria.

2023-04-01 | GSE223919 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data