Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: A triple metabarcoding strategy for discriminating active, dormant, and dead microeukaryotes in environmental samples

PROVIDER: PRJNA1046277 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26977200_1.fastq.gz	Fastqsanger.gz
	SRR26977200_2.fastq.gz	Fastqsanger.gz
	SRR26977201_1.fastq.gz	Fastqsanger.gz
	SRR26977201_2.fastq.gz	Fastqsanger.gz
	SRR26977202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 286

Similar Datasets

Project description:Isolation strategy of Faustovirus from environmental samples

| PRJEB11169 | ENA

Expression data from dormant and germinating conidia from Aspergillus niger.

Project description:Conidia of Aspergillus niger are characterized by a dormant state and are moderate stress-resistant. Upon contact with a moist substrate, germination of conidia occurs by changing from a dormant stabilized state towards a growing vegetative cell. The RNA expression levels of dormant conidia and conidia that were in various stages of germination were studied. The RNA composition of dormant conidia was substantially different than all the subsequent stages of germination. This indicates that the distinct morphological changes that occur during germination are not correlated with the highest change in the transcriptome. Samples of germinating conidia of Aspergillus niger N402 were taken in triple at 0h (dormant), 2h, 4h, 6h and 8h after inoculation in CM.

2012-03-13 | E-GEOD-36439 | biostudies-arrayexpress

Project description:Lost in dead wood? Environmental DNA metabarcoding from dead wood shows little signs of saproxylic beetles

| PRJNA798613 | ENA

Project description:Changes in the Active, Dead, and Dormant Microbial Community Structure Across a Pleistocene Permafrost Chronosequence

| PRJNA486164 | ENA

Project description:Metabarcoding of amphibian pathogens from environmental samples

| PRJNA611823 | ENA

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

Comparative analyses of DMRs

Project description:We clarify the role of the DNA methylation by using microarrays in the shoot apical meristem (SAM) of Populus × euramericana clones dormant or active and submitted to contrasted environments. This work aimed at characterizing: (i) the range of genetic and environmental variations of global DNA methylation and its correlation with biomass production, (ii) mitotically-conserved DMRs in winter-dormant SAM and (iii) common DMRs with their corresponding genes network and their biological role in phenotypic plasticity and stress memory toward natural environment conditions.

2017-03-29 | GSE97144 | GEO

Hypoxia induces the dormant state in oocytes through expression of Foxo3

Project description:In mammals, most immature oocytes remain dormant in the primordial follicles in order to ensure the longevity of female reproductive life. A precise understanding of mechanisms underlying the dormancy is important for reproductive biology and medicine. In this study, by comparing mouse oogenesis in vivo and in vitro, the latter of which bypasses the primordial follicle stage, we defined the gene　expression profile representing the dormant state of oocytes. Overexpression of constitutively active FOXO3 partially reproduced the dormant state in vitro. Based on further gene expression analysis, we found that a hypoxic condition efficiently induced the dormant state in vitro. The effect of hypoxia was severely diminished by disruption of the Foxo3 gene and inhibition of hypoxia-inducible factors. Our findings provide insights into the importance of environmental conditions and their effectors for establishing the dormant state.

2019-05-28 | GSE128305 | GEO