Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Brassica oleracea

ABSTRACT: Brassica oleracea Genome sequencing and assembly

PROVIDER: PRJNA1047966 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR27034700_1.fastq.gz	Fastqsanger.gz
	SRR27061300_1.fastq.gz	Fastqsanger.gz
	SRR27061300_2.fastq.gz	Fastqsanger.gz
	SRR27062700_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1368

Similar Datasets

Transcriptome sequencing of Brassica oleracea tissues

Project description:Deep sequencing of mRNA from seven different tissues of Brassica oleracea Analysis of ploy(A)+ RNA of multiple different tissues of Brassica oleracea containing Bud, Callus, Root, Stem, Leaf, Flower and Silique.

2014-05-27 | E-GEOD-42891 | biostudies-arrayexpress

Transcriptome sequencing of Brassica oleracea tissues

Project description:Deep sequencing of mRNA from seven different tissues of Brassica oleracea

2014-05-27 | GSE42891 | GEO

Brassica oleracea-Alternaria brassicicola interaction during the early stages of leaf infection

Project description:Gene expression changes during the initial stages of black spot disease caused by Alternaria brassicicola on Brassica oleracea (Brassica oleracea var. capitata f. alba, white cabbage) leaves were investigated with Arabidopsis thaliana oligonucleotide microarrays. Transcriptional profiling of infected B. oleracea leaves revealed that photosynthesis was the most negatively regulated biological process. The negative regulation of 6 photosynthesis-related genes, mainly the genes involved in the photosynthesis light reaction and Calvin cycle, was observed as early as 12 hours post infection (hpi). It progressed through 48-hpi stage, when 44 down-regulated photosynthesis-related genes were detected. The analyses of infected leaves at microscopic, ultrastructural and physiological levels supported the microarray-based observations and indicated that the photosynthetic processes are suppressed in B. oleracea as a result of the fungal infection.

2020-07-25 | GSE155051 | GEO

Time course transcriptomic analysis of cabbage (Brassica oleracea ssp. capitala L.) during vernalization

Project description:We report here NGS RNA-seqencing datasets for three different vernalization time course of Brassica oleracea plants

2023-04-17 | GSE229562 | GEO

Brassica oleracea

Project description:Brassica oleracea Genome sequencing and assembly

| PRJNA765062 | ENA

Brassica oleracea

Project description:Brassica oleracea Genome sequencing and assembly

| PRJNA301390 | ENA

Brassica oleracea

Project description:Brassica oleracea Genome sequencing and assembly

| PRJNA762985 | ENA

Functional divergence of PP2Cs encoding genes in Brassica oleracea and Arabidopsis thaliana

Project description:We investigated the expression profiles and genomic organization of PP2Cs-encoding genes in Brassica oleracea. Analysis of cDNA macroarray transcription profiles for Brassica oleracea and Arabidopsis thaliana revealed significant differences in the expression of a gene encoding protein phosphatase 2C, ABI1, a member of the group A PP2C. To gain insight into the ABA signaling network conservation in a model plant and its crop relatives group A PP2C genes in B. oleracea have been identified and functionally characterized. Twenty homologous sequences were identified as putative members of the group A PP2Cs (BolC.PP2Cs). Phylogenetic analysis revealed that the B. oleracea homologues are closely related to the particular members of the A. thaliana PP2C family. The genetic analysis has corroborated the presence of 2 to 3 copies for almost all of the PP2Cs examined, which corresponded to the unique genes in the A. thaliana genome. Gene expression analyses showed that among 15 PP2Cs-encoding genes studied in B.oleracea, BolC.ABI2, BolC.HAB1, BolC.HAB2.a-c, and BolC.PP2CA.a were drought-induced. However, in contrary to AtPP2Cs, only BolC.ABI1.a-b, BolC.ABI2 and BolC.PP2CA.a were ABA-responsive at the time points tested. Our results indicate that in B. oleracea PP2C-based drought stress signaling has evolved distinctly in comparison to A. thaliana. It is hypothesized that different reactions of particular B. oleracea PP2C genes to the water stress and ABA treatment may indicate lower conservation of their specificity in stress-induced reversible phosphorylation-based protein network operating in B. oleracea and A. thaliana.

2012-10-28 | GSE39753 | GEO

Brassica oleracea

Project description:Brassica oleracea Genome sequencing

| PRJNA563996 | ENA

Transcriptomic analysis of Brassica oleracea challenged with Xanthomonas campestris pv. campestris

Project description:We investigated the transcriptome dynamics of Brassica oleracea in response to Xcc race 1 infection at 3 and 12 days after inoculation by using Massive Analysis of 3′-cDNA Ends (MACE) technology

2019-08-15 | GSE107720 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data