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Mya japonica

ABSTRACT: Mya japonica Raw sequence reads

PROVIDER: PRJNA1052363 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR27229024_1.fastq.gz	Fastqsanger.gz
	SRR27229024_2.fastq.gz	Fastqsanger.gz
	SRR27229025_1.fastq.gz	Fastqsanger.gz
	SRR27229025_2.fastq.gz	Fastqsanger.gz
	SRR27229026_1.fastq.gz	Fastqsanger.gz

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Project description:Here, we performed deep transcriptome sequencing for the aerial-tissues and the roots of S. japonica, generating over 2 billion raw reads with an average length of 101 nt by using an Illumina paired-end sequencing by HiSeq2000 platform. Using a combined approach of three popular assemblers, de novo transcriptome assembly for S. japonica was obtained, yielding in 81,729 unigenes with an average length as 884bps and N50-value as 1,452bps, with 46,963 unigenes being annotated based on the sequence similarity against NCBI-nr protein database.

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