Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fusarium graminearum

ABSTRACT: RNA-Seq of Fusarium graminearum

PROVIDER: PRJNA1052425 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27911444_1.fastq.gz	Fastqsanger.gz
	SRR27911444_2.fastq.gz	Fastqsanger.gz
	SRR27911445_1.fastq.gz	Fastqsanger.gz
	SRR27911445_2.fastq.gz	Fastqsanger.gz
	SRR27911446_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Fusarium graminearum

Project description:small RNA-seq of Fusarium graminearum

| PRJNA888203 | ENA

Transcriptome-based comparison of the infection response in maize silks between Fusarium graminearum and Ustilago maydis

Project description:In this study, RNA-seq based comparative transcriptome analysis was used to study the response between Fusarium graminearum and Ustilago maydis to different growth conditions. RNA-seq libraries were generated from fungal filaments growing in culture (complete medium) and from infected maize silk. This data set contains the data for the Fusarium graminearum and Ustilago maydis medium growth condition.

2019-03-17 | E-MTAB-4562 | biostudies-arrayexpress

RNA-seq Analysis of FlbD-, AbaA-, and WetA-dependent Genes in Fusarium graminearum Z-3639

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. Conidiogenesis had been intensively studied in Aspergillus nidulans and regulatory pathway genes have been known to regulate conidiogenesis in stage specific manner. We reported the functional analyses of flbD, abaA, and wetA orthologs in F. graminearum. To understand genome-wide transcriptional profiling of conidiation, we employed RNA-seq of the wild-type Fusarium graminearum Z-3639 and each gene deletion mutants with three time courses (0 h, 6 h and 12 h after induction of conidiogenesis). AbaA experiment: 6 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum Z-3639 wild type and ΔabaA(ΔabaA::gen) mutant strains WetA experiment: 3 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum ΔwetA(ΔwetA::gen) mutant strains flbD experiment: 3 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum ΔflbD(ΔflbD::gen) mutant strains

2013-11-10 | E-GEOD-46133 | biostudies-arrayexpress

Fusarium graminearum

Project description:Strand-specific RNA-seq of Fusarium graminearum

| PRJNA884510 | ENA

The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters

Project description:We performed ChIP-seq of histone modifications and RNA-seq in WT and kmt6 mutant Fusarium graminearum grown in high and low nitrogen conditions.

2014-02-27 | GSE50689 | GEO

RNA-seq Analysis of FlbD-, AbaA-, and WetA-dependent Genes in Fusarium graminearum Z-3639

2013-11-10 | GSE46133 | GEO

RNA-seq analysis of Fusarium graminearum Z-3639 in heat stress

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect cellular responses toward heat stress in the plant pathogenic fungus F. graminearum, we compared transcriptomes of the fungal cultures incubated in normal temperature condition (25 ÂºC) and in high temperature condition (37 ÂºC) for 15 min. 6 samples examined: 24 h-old mycelia from complete medium (CM) of Fusarium graminearum wild-type Z-3639 were incubated in normal temperature condition (25 ÂºC) and in high temperature condition (37 ÂºC) for 15 min.

2016-05-13 | E-GEOD-78885 | biostudies-arrayexpress

Fusarium graminearum in vitro secretome

Project description:The plant pathogenic fungus Fusarium graminearum (Fgr) creates economic and health risks in cereals agriculture. Fgr causes head blight (or scab) of wheat and stalk rot of corn, reducing yield, degrading grain quality and polluting downstream food products with mycotoxins. Fungal plant pathogens must secrete proteases to access nutrition and to breakdown the structural protein component of the plant cell wall. Research into the proteolytic activity of Fgr is hindered by the complex nature of the suite of proteases secreted. We used a systems biology approach comprising genome analysis, transcriptomics and label-free quantitative proteomics to characterise the peptidases deployed by Fgr during growth. A combined analysis of published microarray transcriptome datasets revealed seven transcriptional groupings of peptidases based on in vitro growth, in planta growth, and sporulation behaviours. An orbitrap MS/MS proteomics technique defined the extracellular proteases secreted by Fusarium graminearum.

2015-10-06 | PXD002786 | Pride

Fusarium graminearum

Project description:Fusarium graminearum Epigenomics

| PRJNA995191 | ENA

Fusarium graminearum

Project description:Fusarium graminearum Assembly

| PRJNA297826 | ENA