Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression profile at single cell level of OP patient and healthy control

ABSTRACT: Gene expression profile at single cell level of OP patient and healthy control

PROVIDER: PRJNA1053822 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27239180_1.fastq.gz	Fastqsanger.gz
	SRR27239180_2.fastq.gz	Fastqsanger.gz
	SRR27239181_1.fastq.gz	Fastqsanger.gz
	SRR27239181_2.fastq.gz	Fastqsanger.gz
	SRR27239182_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Gene expression profile at single cell level of OP patient and healthy control

Project description:To characterize the cellular composition of the lung tissues of OP patient, we collected lung samples for scRNA-seq from one patient with OP, one healthy control

2024-08-26 | GSE250404 | GEO

SAGE in Rhipicephalus (Boophilus) microplus following OP treatment of larvae from OP resistant/susceptible strains.

Project description:Organophosphate resistant and susceptible tick larvae from laboratory strains of the southern cattle tick, Rhipicephalus (Boophilus) microplus were exposed to low doses of the organophosphate (OP) acaricide, coumaphos. Serial Analysis of Gene Expression (SAGE) was used to analyze differential gene expression in response to OP treatment and to compare the responses in OP-treated and untreated resistant and susceptible tick larvae. ** note: Contact person is Felix D. Guerrero. email: felix.guerrero@ars.usda.gov Keywords: SAGE, acaricide response, organophosphate.

2008-05-14 | GSE10109 | GEO

Expression of circular RNA in tuberculosis patient and healthy control

Project description:A comprehensive profiling of known human circular RNA is performed on both TB patient and healthy control.

2018-03-07 | GSE103188 | GEO

SAGE in Rhipicephalus (Boophilus) microplus following OP treatment of larvae from OP resistant/susceptible strains.

2008-05-14 | E-GEOD-10109 | biostudies-arrayexpress

Gene expression profile of healthy-donor peripheral monocytes, glioblastoma-patient peripheral monocytes, and glioblastoma-infiltrating myeloid cells

Project description:We compared gene expression profile between healthy-donor peripheral monocytes and glioblastoma-patient peripheral monocytes as well as glioblastoma-patient peripheral monocytes with matched tumor-infiltrating myeloid cells.

2016-01-23 | GSE77043 | GEO

PBMCs from healthy donors and CTCL patient control vs SEB stimulation

Project description:PBMCs from healthy donors and CTCL patient control vs SEB stimulation

| PRJNA756285 | ENA

Exon level expression analysis from rhabdomyosarcoma patient tumors.

Project description:Exon level expression analysis from rhabdomyosarcoma patient tumors.

| PRJNA471927 | ENA

CTL-OA-OP human IT PF Bone - CompuGen H19K microarray study

Project description:Aims of study: (1) To identify systemic differences in osteoarthritic (OA) bone that contribute to OA pathogenesis. (2) Identify novel osteoporotic (OP) bone-related disease genes. Study involved comparison of trabecular bone extracted from the intertrochanteric (IT) region of the proximal femur (PF) from OA, OP and normal/control (CTL) individuals. Bone was obtained from OA and OP individuals at surgery for total hip replacement and from CTL individuals at autopsy. Keywords: Bone tissue comparison, diseased versus non-diseased, factorial design, linear modelling

2008-01-14 | GSE8406 | GEO

Gene expression in human healthy control and ISCU myopathy patient muscle biopsies

Project description:We performed microarray analysis on ISCU myopathy patient muscle biopsies to identify transcriptional modulation of pathways involved in the cellular response to Fe-S cluster deficiency. We included RNA samples from five healthy control individuals as well as three different ISCU myopathy patients.

2013-09-23 | E-GEOD-48574 | biostudies-arrayexpress

Comparison study between Uremic patient with Healthy control

Project description:Patients with chronic kidney disease (CKD) have significantly increased morbidity and mortality resulting from infections and cardiovascular diseases. Since monocytes play an essential role in host immunity, this study was directed to explore the gene expression profile and to identify differences in activated pathways in monocytes relevant to the pathophysiology of atherosclerosis and increased susceptibility to infections. Monocytes from CKD patients (stages 4 and 5, eGFR <20 ml/min x 1.73 m2) and healthy donors were collected from peripheral blood. Microarray gene expression profile was done and data were interpreted by Genespring software and Panther tools website. Western blot was done to validate the pathway members. The results demonstrated that 487 and 258 genes were differentially up- and down regulated respectively in the patient group. Pathways involved in the inflammatory response were highly expressed and the Wnt/β- catenin signaling pathway was the most significant pathway expressed in the patient group (P=0.02). Since this pathway has been attributed to a variety of inflammatory manifestations, the current finding may contribute to dysfunctional monocytes in CKD patients. To develop strategies to interfere with this pathway may improve host immunity and prevent cardiovascular complications in CKD patients. Six gene expression Affymetrix chip were used. Three for each group

2013-01-15 | E-GEOD-43484 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data