Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: pig colon microbial sequencing

PROVIDER: PRJNA1054783 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27316517_1.fastq.gz	Fastqsanger.gz
	SRR27316517_2.fastq.gz	Fastqsanger.gz
	SRR27316518_1.fastq.gz	Fastqsanger.gz
	SRR27316518_2.fastq.gz	Fastqsanger.gz
	SRR27316519_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

GEX: Single-cell RNA sequencing of human steady-state immune cells from the lamina propria of colon and matching mesenteric lymph nodes

Project description:The human colon contains an extensively diverse microbial ecosystem and one of the most numerous communities of immune cells. Studies have highlighted dynamic crosstalk between immune cells and commensals. While studies have demonstrated increasing diversity of microbiota from stomach to stool, whether and how immune cell heterogeneity and microbiota diversity change across the colon is undefined. Furthermore, whether these changes are co-depended in the healthy colon is unknown. Here, tissue samples are collected from caecum, transverse colon, sigmoid colon and mLN of cadaveric donors by the Cambridge Biorepository of Translational Medicine (CBTM). We use single cell RNA sequencing (10X genomics) to assess the dynamics of immune cell populations across the colon and in matching lymph nodes. Associated microbiome 16S sequencing data is available.

2020-01-01 | E-MTAB-8474 | biostudies-arrayexpress

Single-cell RNA sequencing of human steady-state immune cells from the lamina propria of colon and matching mesenteric lymph nodes

2020-01-01 | E-MTAB-8007 | biostudies-arrayexpress

VDJ: Single-cell RNA sequencing of human steady-state immune cells from the lamina propria of colon and matching mesenteric lymph nodes

2020-01-01 | E-MTAB-8476 | biostudies-arrayexpress

SS2_2: Single-cell RNA sequencing of human steady-state immune cells from the lamina propria of colon and matching mesenteric lymph nodes

2020-01-01 | E-MTAB-8486 | biostudies-arrayexpress

SS2_1: Single-cell RNA sequencing of human steady-state immune cells from the lamina propria of colon and matching mesenteric lymph nodes

2020-01-01 | E-MTAB-8484 | biostudies-arrayexpress

Study on the differences of the longissimus dorsi muscle and back fat between large Diqing Tibetan pig and duroc Duroc pig based on proteome sequencing.

Project description:Study on the differences of the longissimus dorsi muscle and back fat between large Diqing Tibetan pig and duroc Duroc pig based on proteome sequencing.

2023-05-29 | PXD042520 |

Expression data from LoVo colon cancer lines +/- constitutive LIN28B expression

Project description:We sought to elucidate the molecular mechanisms whereby LIN28B functions by comparing the gene expression profile of cells constitutively expressing LIN28B to empty vector controls. Accordingly, we performed microarray analysis on total RNA isolated from empty vector LoVo and LIN28B-expressing LoVo colon cancer cell lines. Constitutive LIN28B expression was achieved in the LoVo (ATCC #CCL-229) colon cancer cell line via retroviral transduction of MSCV-PIG-LIN28B. Contol = empty vector MSCV-PIG.

2010-12-29 | E-GEOD-26334 | biostudies-arrayexpress

Xenomicrobiota transplant experiment

Project description:Gut microbes elicit specific changes in gene expression in the colon of mice. We colonized germ-free mice with microbial communities from the guts of humans, zebrafish and termites, human skin and tongue, soil and estuarine microbial mats. We used microarrays to detail the differences in global gene expression in colon tissue that are caused by the different microbial communities 28 days after gavage into the germfree animal.

2014-10-02 | GSE57589 | GEO

Xenomicrobiota transplant experiment

2014-10-02 | E-GEOD-57589 | biostudies-arrayexpress

Project description:16s data of pig colon

| PRJNA944824 | ENA