Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ciona robusta

ABSTRACT: RNAseq analysis of Pax3/7 overexpression in the A9.30 lineage of Ciona robusta embryos

PROVIDER: PRJNA1056038 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27370569_1.fastq.gz	Fastqsanger.gz
	SRR27370569_2.fastq.gz	Fastqsanger.gz
	SRR27370570_1.fastq.gz	Fastqsanger.gz
	SRR27370570_2.fastq.gz	Fastqsanger.gz
	SRR27370571_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Ciona robusta

Project description:RNAseq of Ebf overexpression in the tail muscles of Ciona robusta embryos

| PRJNA1068599 | ENA

Ciona robusta

Project description:Ciona robusta overview

| PRJNA353535 | ENA

Ciona robusta

Project description:Ciona robusta Raw sequence reads

| PRJNA1010678 | ENA

Ciona robusta

Project description:Ciona robusta Raw sequence reads

| PRJNA775866 | ENA

Ciona robusta strain:Intestinalis Type A

Project description:Ciona robusta Islet overexpression and CRISPR (in papillae) bulk RNAseq

| PRJNA949791 | ENA

10X Genomics Single Cell RNAseq of wild-type Ciona robusta embryos at 12 hours post fertilization (hpf)

Project description:We used 10X Genomics Chromium system to profile single cells from a pool of Wild-type Ciona robusta embyros at 12 hours post fertilization (hpf)

2021-05-10 | GSE174127 | GEO

Ciona robusta

Project description:Transcriptional plasticity under salinity stress in highly invasive ascidian Ciona robusta

| PRJNA1013992 | ENA

Ciona robusta breed:wild

Project description:Ciona robusta breed:wild Transcriptome or Gene expression

| PRJNA1031967 | ENA

Single-cell transcriptome profiling of the Ciona larval brain

Project description:The tadpole-type larva of Ciona has emerged as an intriguing model system for the study of neurodevelopment. The Ciona intestinalis connectome has been recently mapped, revealing the smallest central nervous system (CNS) known in any chordate, with only 177 neurons. This minimal CNS is highly reminiscent of larger CNS of vertebrates, sharing many conserved developmental processes, anatomical compartments, neuron subtypes, and even specific neural circuits. Thus, the Ciona tadpole offers a unique opportunity to understand the development and wiring of a chordate CNS at single-cell resolution. Here we report the use of single-cell RNAseq to profile the transcriptomes of single cells isolated by fluorescence-activated cell sorting (FACS) from the whole brain of Ciona robusta (formerly intestinalis Type A) larvae. We have also compared these profiles to bulk RNAseq data from specific subsets of brain cells isolated by FACS using cell type-specific reporter plasmid expression. Taken together, these datasets have begun to reveal the compartment- and cell-specific gene expression patterns that define the organization of the Ciona larval brain.

2018-10-26 | GSE121807 | GEO

ciHMX overexpression in Ciona intestinalis embryos

Project description:We recently showed HMX is expressed in bipolar tail neurons (BTN) in early embryos of Ciona intestinalis. In order to assess the function of the homeobox transcription factor in this cell fate, we used an overexpression strategy. ciHMX was overexpressed in the epidermis, followed by RNAseq of experimental and control embryos. We then looked for differential expression of BTN fate markers, testing if HMX is able to regulate BTN fate determination.

2021-11-26 | GSE141046 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data