Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Actinacidiphila polyblastidii strain:V4-01

ABSTRACT: Streptomyces sp. V4-01

PROVIDER: PRJNA1056770 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR27370147.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Streptomyces sp. 01 strain:01

Project description:Streptomyces sp. 01 strain:01 Genome sequencing

| PRJNA625336 | ENA

Sphingobium sp. V4 strain:V4

Project description:Sphingobium sp. V4 strain:V4 Genome sequencing

| PRJNA753255 | ENA

Erwinia sp. V4 strain:V4

Project description:Erwinia sp. V4 strain: Genome sequencing

| PRJNA855316 | ENA

Streptomyces sp. strain:TKZ-01

Project description:Streptomyces sp. TKZ-01 Genome sequencing

| PRJDB11070 | ENA

Streptomyces sp. S10-01

Project description:Streptomyces sp. S10-01 Genome sequencing

| PRJNA546646 | ENA

Identification of genes modulate by MLS000408882-01 and MLS000573813-01 in lung cancer cells

Project description:MLS000408882-01 and MLS000573813-01 were identified through a cell based screen that measures the reactivation of an epigenetically silenced transgene. MLS000408882-01 and MLS000573813-01 shows selectivity for cancer vs. normal cells affecting both transcriptional patterns and cell viability in a cancer specific manner.

2017-02-09 | GSE59077 | GEO

Rhodococcus sp. 01 strain:01

Project description:Rhodococcus sp. 01 strain:01 Genome sequencing and assembly

| PRJNA305563 | ENA

Serratia plymuthica strain:V4

Project description:Serratia plymuthica V4 Genome sequencing

| PRJNA240341 | ENA

Actinacidiphila bryophytorum

Project description:Streptomyces bryophytorum overview

| PRJNA873178 | ENA

Arabidopsis thaliana-Actinacidiphila interaction

Project description:How bacteria from the microbiota modulate the physiology of its host is an important question to address. Previous work revealed that the metabolic status of Arabidopsis thaliana was crucial for the specific recruitment of Streptomycetaceae into the microbiota. Here, the Arabidopsis-Actinacidiphila interaction was further depicted by inoculating axenic Arabidopsis with Actinacidiphila cocklensis DSM 42063 or Actinacidiphila bryophytorum DSM 42138(previously named Streptomyces cocklensis and Streptomyces bryophytorum). We demonstrated that these two bacteria colonize A. thaliana wild-type plants, but their colonization efficiency was reduced in a chs5 mutant with defect in isoprenoid, phenylpropanoids and lipids synthesis. We observed that those bacteria affect the growth of the chs5 mutant but not of the wild-type plants. Using a mass spectrometry-based proteomic approach, we showed a modulation of the Arabidopsis proteome and in particular its components involved in photosynthesis or phytohormone homeostasis or perception by A. cocklensis and A. bryophytorum. This study unveils specific aspects of the Actinacidiphila-Arabidopsis interaction, which implies molecular processes impaired in the chs5 mutant and otherwise at play in the wild-type. More generally, this study highlights complex and distinct molecular interactions between Arabidopsis thaliana and bacteria belonging to the Actinacidiphila genus.

2024-01-29 | PXD041221 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data