Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Greywater-treating Electrochemical Anaerobic Systems with Attached Growth on Conductive Substrates

PROVIDER: PRJNA1056915 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27364490_1.fastq.gz	Fastqsanger.gz
	SRR27364490_2.fastq.gz	Fastqsanger.gz
	SRR27364491_1.fastq.gz	Fastqsanger.gz
	SRR27364491_2.fastq.gz	Fastqsanger.gz
	SRR27364492_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Overexpression of the adenylate cyclase gene cyaC facilitates current generation by Shewanella oneidensis in bioelectrochemical systems

Project description:Electrochemically active bacteria (EAB) are capable of electrochemical interactions with electrodes via extracellular electron transfer (EET) pathways and serve as essential components in bioelectrochemical systems. Previous studies have suggested that EAB, such as Shewanella oneidensis MR-1, use cyclic AMP (cAMP) receptor proteins for coordinately regulating the expression of catabolic and EET-related genes, allowing us to hypothesize that the intracellular cAMP concentration is an important factor determining electrochemical activities of EAB. The present study constructed an MR-1 mutant, cyaC-OE that overexpressed cyaC, a gene encoding a membrane-bound class III adenylate cyclase, and examined its electrochemical and transcriptomic characteristics. We show that intracellular cAMP concentration in cyaC-OE is more than double that in wild-type MR-1, and cya-OE generates approximately two-fold higher current in BES than the wild type. In addition, the expression of genes involved in EET and anaerobic carbon catabolism is up-regulated in cya-OE as compared to that in the wild type. These results suggest that enhancement of the intracellular cAMP level is a promising approach for constructing an EAB with high catabolic and electrochemical activities.

2019-11-01 | GSE129679 | GEO

biofilm metagenome

Project description:Bacterial communities of biofilm treating greywater

| PRJNA300931 | ENA

Microbial dynamics and biofouling in AnMBRs

Project description:Microbial dynamics and biofouling in suspended and attached growth anaerobic membrane bioreactors treating low-strength synthetic wastewater

| PRJEB8654 | ENA

Project description:microbial community attached to artificial substrates

| PRJNA413567 | ENA

Membrane potential limits growth and substrate utilization in C. bescii, alleviation dramatically improves productivity

Project description:Caldicellulosiruptor bescii is an anaerobic hyper thermophile that can utilize a wide range of substrates. However, inhibitors released from biomass can result in unfavorable growth conditions and limit bioconversion to products. Medium as well as intracellular pH are conditions critical for growth and prone to change in effect of fermentation end or by products such as, CO2, organic acids etc. Growth pH for C. bescii as currently reported is a narrow range of 6.8-7.3. In this study, we examined the physiological and systems level responses of C. bescii to growth at acidic pH. Samples collected from bottles, controlled batch, fed-batch and chemostat systems were subjected to growth, product and integrated omics profiling. It was discovered that in batch reactors, lowering pH from 7.2 to 6.0 at the mid-log phase, led to a significant increase in growth and product yields. Time course transcriptomics data collected from these batch reactors was analyzed to try and get a better understanding of the underlying mechanisms for improved growth.

2020-06-19 | GSE109442 | GEO

Project description:Bacterial community in Membrane bioreactor for treating greywater

| PRJNA530355 | ENA

The microbial functional gene diversity in anaerobic digesters under different organic loadings

Project description:Anaerobic digestion is a popular and effective microbial process for waste treatment. The performance of anaerobic digestion processes is contingent on the balance of the microbial food web in utilizing various substrates. Recently, co-digestion, i.e., supplementing the primary substrate with an organic-rich co-substrate has been exploited to improve waste treatment efficiency. Yet the potential effects of elevated organic loading on microbial functional gene community remains elusive. In this study, functional gene array (GeoChip 5.0) was used to assess the response of microbial community to the addition of poultry waste in anaerobic digesters treating dairy manure. Consistent with 16S rRNA gene sequences data, GeoChip data showed that microbial community compositions were significantly shifted in favor of copiotrophic populations by co-digestion, as taxa with higher rRNA gene copy number such as Bacilli were enriched. The acetoclastic methanogen Methanosarcina was also enriched, while Methanosaeta was unaltered but more abundant than Methanosarcina throughout the study period. The microbial functional diversity involved in anaerobic digestion were also increased under co-digestion.

2017-01-12 | GSE93419 | GEO

BRISK2 - growth of methanogenic archaea

Project description:Growth of methanogenic archaea in a unified growth medium for use in microbial electrochemical systems

| PRJEB53211 | ENA

Project description:Accelerating anaerobic digestion process with novel single-chamber microbial electrochemical systems with baffle

| PRJNA846936 | ENA

Proteome analysis of Desulfuromonas acetexigens

Project description:Desulfuromonas acetexigens is capable of extracellular electron transfer (EET) and can generate high peak current densities >9 A/m2 in a very short period (~20 h after inoculation) under potential induced growth (–0.1 V vs. Ag/AgCl) and acetate as the electron donor. Despite its high electrochemical activity in microbial electrochemical systems, the proteome and EET mechanisms of D. acetexigens are still unknown. Here, the proteome of D. acetexigens was characterized and a stimulus-induced comparative analysis was performed to elucidate its putative EET mechanism. Proteome analysis indicates that D. acetexigens is a versatile bacterium with a high diversity of accessory genes that allow it to adapt to diverse environments.

2025-06-09 | PXD034195 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data