Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Coastal wetland soil sample in the Yangtze Estuary

ABSTRACT: Coastal wetland soil sample in the Yangtze Estuary Raw sequence reads

PROVIDER: PRJNA1058218 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27377400.fastq.gz	Fastqsanger.gz
	SRR27377500.fastq.gz	Fastqsanger.gz
	SRR27377401.fastq.gz	Fastqsanger.gz
	SRR27377501.fastq.gz	Fastqsanger.gz
	SRR27377402.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 256

Similar Datasets

Sediment sample in the Yangtze Estuary

Project description:Sediment sample in the Yangtze Estuary

| PRJNA1067289 | ENA

Sediment sample in the Yangtze Estuary

Project description:Sediment sample in the Yangtze Estuary Metagenome

| PRJNA951356 | ENA

Sediment sample in Yangtze Estuary

Project description:Raw sequence reads of sediment sample in Yangtze Estuary

| PRJNA951538 | ENA

Water sample in the Yangtze Estuary

Project description:Water sample in the Yangtze Estuary Raw sequence reads

| PRJNA923751 | ENA

Sediment sample in the Yangtze Estuary

Project description:Sediment sample in the Yangtze Estuary Raw sequence reads

| PRJNA947356 | ENA

Sediment sample in the Yangtze Estuary

Project description:Sediment sample in the Yangtze Estuary Raw sequence reads

| PRJNA947817 | ENA

Water sample in the Yangtze Estuary

Project description:Raw sequence reads of water samples in the Yangtze Estuary

| PRJNA670517 | ENA

Water sample in the Yangtze Estuary

Project description:Raw sequence reads of nitrifier enrichments from bottom water of the Yangtze Estuary

| PRJNA876082 | ENA

Samples from the Yangtze Estuary

Project description:Impact of bioturbation on microbial diversity at Yangtze Estuary

| PRJNA784163 | ENA

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

Project description:Analysis of microbial gene expression in response to physical and chemical gradients forming in the Columbia River, estuary, plume and coastal ocean was done in the context of the environmental data base. Gene expression was analyzed for 2,234 individual genes that were selected from fully sequenced genomes of 246 prokaryotic species (bacteria and archaea) as related to the nitrogen metabolism and carbon fixation. Seasonal molecular portraits of differential gene expression in prokaryotic communities during river-to-ocean transition were created using freshwater baseline samples (268, 270, 347, 002, 006, 207, 212). Total RNA was isolated from 64 filtered environmental water samples collected in the Columbia River coastal margin during 4 research cruises (14 from August, 2007; 17 from November, 2007; 18 from April, 2008; and 16 from June, 2008), and analyzed using microarray hybridization with the CombiMatrix 4X2K format. Microarray targets were prepared by reverse transcription of total RNA into fluorescently labeled cDNA. All samples were hybridized in duplicate, except samples 212 and 310 (hybridized in triplicate) and samples 336, 339, 50, 152, 157, and 199 (hybridized once). Sample location codes: number shows distance from the coast in km; CR, Columbia River transect in the plume and coastal ocean; NH, Newport Hydroline transect in the coastal ocean at Newport, Oregon; AST and HAM, Columbia River estuary locations near Astoria (river mile 7-9) and Hammond (river mile 5), respectively; TID, Columbia River estuary locations in the tidal basin (river mile 22-23); BA, river location at Beaver Army Dock (river mile 53) near Quincy, Oregon; UP, river location at mile 74.

2010-09-10 | E-GEOD-18303 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data