Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Isolation of pesticide-degrading bacterial consortia from soil

PROVIDER: PRJNA1061744 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27457942_1.fastq.gz	Fastqsanger.gz
	SRR27457942_2.fastq.gz	Fastqsanger.gz
	SRR27457943_1.fastq.gz	Fastqsanger.gz
	SRR27457943_2.fastq.gz	Fastqsanger.gz
	SRR27457944_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

BOX1 proteome - Thermophilic archaea activate butane via alkyl-coenzyme M formation

Project description:Metaproteome of an Archaeal-Bacterial consortia degrading butane anaerobically

2016-11-01 | PXD005038 | Pride

activated sludge metagenome

Project description:PFAS degrading bacterial consortia

| PRJDB14649 | ENA

Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments

Project description:Biotransformation of soil organochlorine pesticides (OCP) is often impeded by a lack of nutrients relevant for bacterial growth and/or co-metabolic OCP biotransformation. By providing space-filling mycelia, fungi promote contaminant biodegradation by facilitating bacterial dispersal and the mobilization and release of nutrients in the mycosphere. We here tested whether mycelial nutrient transfer from nutrient-rich to nutrient-deprived areas facilitates bacterial OCP degradation in a nutrient-deficient habitat. The legacy pesticide hexachlorocyclohexane (HCH), a non-HCH-degrading fungus (Fusarium equiseti K3), and a co-metabolically HCH-degrading bacterium (Sphingobium sp. S8) isolated from the same HCH-contaminated soil were used in spatially structured model ecosystems. Using 13C-labelled fungal biomass and protein-based stable isotope probing (protein-SIP), we traced the incorporation of 13C fungal metabolites into bacterial proteins while simultaneously determining the biotransformation of the HCH isomers. The relative isotope abundance (RIA, 7.1 – 14.2%), labeling ratio (LR, 0.13 – 0.35), and the shape of isotopic mass distribution profiles of bacterial peptides indicated the transfer of 13C-labeled fungal metabolites into bacterial proteins. Distinct 13C incorporation into the haloalkane dehalogenase (linB) and 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (LinC), as key enzymes in metabolic HCH degradation, underpin the role of mycelial nutrient transport and fungal-bacterial interactions for co-metabolic bacterial HCH degradation in heterogeneous habitats. Nutrient uptake from mycelia increased HCH removal by twofold as compared to bacterial monocultures. Fungal-bacterial interactions hence may play an important role in the co-metabolic biotransformation of OCP or recalcitrant micropollutants (MPs).

2023-02-24 | PXD038571 | Pride

Pesticide degrading bacterial populations on glacier

Project description:Pesticide degrading bacterial populations on glacier

| PRJEB21726 | ENA

Project description:Tiamulin degrading bacterial consortia Metagenome

| PRJNA431340 | ENA

Metaproteome analysis of two synthetic bacterial consortia

Project description:Two synthetic bacterial consortia (SC) composed by bacterial strains isolated from a natural phenanthrene-degrading consortium (CON), Sphingobium sp. AM, Klebsiella aerogenes B, Pseudomonas sp. Bc-h and T, Burkholderia sp. Bk and Inquilinus limosus Inq were grown in LMM supplemented with 200 mg/L of phenanthrene (PHN) during 72 hours in triplicate.

2021-09-09 | PXD022882 | Pride

Project description:Pesticide degrading bacteria

| PRJNA1101212 | ENA

Project description:Pesticide degrading bacteria

| PRJNA1181110 | ENA

Project description:Microbial Communities of Azole Degrading Consortia, BTEX degrading consortia, and NTO degrading Consortia

| PRJNA686425 | ENA

Pyrosequencing of soil 16S rRNA gene

Project description:Pyrosequencing analysis of Soil Consortia Degrading Octachlorodibenzofuran

| PRJEB4603 | ENA