Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salmonella phage NM-3

ABSTRACT: Salmonella phage NM-3 Raw sequence reads

PROVIDER: PRJNA1062273 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27462432_1.fastq.gz	Fastqsanger.gz
	SRR27462432_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Salmonella phage NM-3

Project description:Salmonella phage NM-3 Genome sequencing and assembly

| PRJNA1045011 | ENA

Salmonella-Salmonella phage

Project description:Salmonella-Salmonella phage transcriptome raw data Raw sequence reads

| PRJNA1048096 | ENA

Salmonella phage BPS15S6 isolate:Salmonella phage BPS15S6

Project description:Salmonella phage BPS15S6 isolate:Salmonella phage BPS15S6 Raw sequence reads

| PRJNA531662 | ENA

Transcription profiling of Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) isolates

Project description:Salmonella enterica serovar Typhimurium (S. Typhimurium) definitive phage type 104 (DT104) has caused significant morbidity and mortality in humans and animals for almost three decades. We have completed the full DNA sequence of one DT104 strain, NCTC13348 and show that the main differences between the genome of this isolate and the previously sequenced S. Typhimurium LT2 lie in integrated prophage elements and the Salmonella Genomic Island 1 encoding antibiotic resistance genes. Thirteen isolates of S. Typhimurium DT104 with different pulsed field gel electrophoresis (PFGE) profiles were analyzed by multi locus sequence typing (MLST), plasmid profiling, hybridization to a Pan-Salmonella DNA microarray and prophage-based multiplex PCR. All the isolates belonged to a single MLST type ST19. Microarray data demonstrated that the 13 DT104 isolates were remarkably conserved in gene content. The PFGE band-size differences in these isolates could be explained to a great extent by changes in prophage and plasmid content. Thus, here the nature of variation in different S. Typhimurium DT104 isolates is further defined at the genome level illustrating how this phage type is evolving over time.

2008-09-05 | E-MTAB-20 | biostudies-arrayexpress

Quantitative proteomic and phosphoproteomic analyses of phage JSS1 infected Salmonella

Project description:This project is about the proteomic and phosphoproteomic analyses of phage JSS1 or JSS1Δ004 infected Salmonella strains. AD032TQ is proteomes of phage JSS1 or JSS1Δ004 infected S. enterica serovar Cerro 87. AD032TPST is phosphoproteome of phage JSS1 or JSS1Δ004 infected S. enterica serovar Cerro 87. AE065TQ is proteomes of phage JSS1 or JSS1Δ004 infected CX1, a S. enterica serovar Cerro 87 dndFGH deficient strain, harboring a plasmid expressing DndFGH from Escherichia coli B7A. AE065TPST is phosphoproteome of phage JSS1 or JSS1Δ004 infected CX1 harboring a plasmid expressing DndFGH from E. coli B7A.

2024-10-04 | PXD056217 | Pride

Quantitative proteomic and phosphoproteomic analyses of phage JSS1 infected Salmonella

2024-10-04 | PXD056225 | Pride

Quantitative proteomic and phosphoproteomic analyses of phage JSS1 infected Salmonella

2024-10-04 | PXD056223 | Pride

Quantitative proteomic and phosphoproteomic analyses of phage JSS1 infected Salmonella

2024-10-04 | PXD056211 | Pride

Salmonella phage VTCCBPA26 isolate:Salmonella phage VTCCBPA26

Project description:Salmonella phage VTCCBPA26 isolate:Salmonella phage VTCCBPA26 Assembly

| PRJNA605298 | ENA

Salmonella phage BAU.Micro_SLP-22 isolate:SLP-22

Project description:Salmonella phage BAU.Micro_SLP-22 isolate:SLP-22 Raw sequence reads