Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Intestinal metagenomic data of migratory birds

PROVIDER: PRJNA1063657 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27489431_1.fastq.gz	Fastqsanger.gz
	SRR27489431_2.fastq.gz	Fastqsanger.gz
	SRR27489432_1.fastq.gz	Fastqsanger.gz
	SRR27489432_2.fastq.gz	Fastqsanger.gz
	SRR27489433_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 104

Similar Datasets

Project description:Intestinal flora of migratory birds

| PRJNA689974 | ENA

Project description:migratory birds Vibrio

| PRJNA720630 | ENA

Project description:Metagenomic Analysis of Wild Migratory Birds in inner mongolia

| PRJNA1190519 | ENA

bird metagenome

Project description:Metagenomic sequence data of Neophema birds

| PRJNA750905 | ENA

Project description:Microbial amplification sequencing data of Poyang Lake influenced by migratory birds

| PRJNA1177114 | ENA

Transcriptome Analyses of Heart and Liver Reveal Novel Pathways for Regulating Songbird Migration

Project description:Most migrating passerine birds undertake their long biannual voyages during the night. During these times of the year birds are in a continuous state of severe sleep restriction, yet curiously they perform as well, or better, on tests of physical and cognitive performance than during non-migrating times of the year. This inherent physiological protection, a component of the endogenous circannual program regulating this crucial life history stage, disappears when birds are forced to stay awake at other times of the year, demonstrating that these protective changes are only associated with the nocturnal migratory state. The goal of the current study was to identify the physiological mechanisms that confer protection against the usually negative consequences of sleep loss while simultaneously allowing for the increased metabolic and cardiovascular output required for migration. To that end, we performed an RNA-seq analysis of heart and Liver collected from birds at different times of day under different migratory states and analyzed these data using differential expression, Ingenuity Pathway Analysis and Weighted Gene Co-expression Network Analysis. We identified numerous changes in gene expression networks implicating the involvement of multiple systems and pathways. These pathways regulate many aspects of metabolism, immune function, extracellular matrix wound repair, and protection of multiple organ systems in the body. Consequently, the circannual program controlling the appearance of the migratory phenotype involves the complex regulation of diverse gene networks associated with the physical demands of migration.

2019-04-23 | GSE116989 | GEO

Project description:Vibrio parahaemolyticus from Migratory birds in China

| PRJNA786264 | ENA

Project description:Comparative phylogeography of North American migratory birds

| PRJNA1130443 | ENA

Escherichia albertii

Project description:Chrarcterization of Escherichia albertii isolated from migratory birds

| PRJNA852350 | ENA

Intestinal development in two divergent chicken lines (X and Y)

Project description:The objective of this study was to investigate the impact of genotypic variation on both early microbial colonization of the gut and functional development of intestinal tissue. From two genetically diverse chicken lines intestinal content samples were taken for microbiota analyzes and intestinal tissue samples were extracted for gene expression analyzes, both at three subsequent time-points (days 0, 4, and 16). 1-day-old chicks (Lines X and Y) were housed in a floor pen system in which the chicks had ad libitum access to feed and water. At days 0, 4 and 16, 80 birds of each line X and line Y were sacrificed for tissue sampling, in total 240 birds per line. Subsequently, samples from these 80 birds were pooled in 8 pools of ten birds.

2016-01-14 | E-GEOD-65042 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data