Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Rooster testicular transcriptome

PROVIDER: PRJNA1065251 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27558889_1.fastq.gz	Fastqsanger.gz
	SRR27558889_2.fastq.gz	Fastqsanger.gz
	SRR27558890_1.fastq.gz	Fastqsanger.gz
	SRR27558890_2.fastq.gz	Fastqsanger.gz
	SRR27558891_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Integrated study of the miRNA networks in testicular heat exposure

Project description:The World Health Organization has recognized testicular function with temperature dependence. Testicular heat exposure caused by occupational factors, lifestyle and clinical disease, etc., can lead to different degrees of reproductive obstacles. The aim of this study is to reveal the transcriptional regulatory network and their potential crucial roles in testicular heat exposure. After passing quality control, the high throughput sequencing data of mouse testicular tissue for scrotum heat exposure and control group were carried out various analyses including differentially expressed transcriptome exploration, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) and network regulation. Differential transcriptome expression analysis revealed that 279 miRNAs (138 upregulation and 141 downregulation) were identified as significant differential expression in the mouse testicular tissue of heat exposure compared with control group using the cut-off of log2fold change >= 0.585, p value <= 0.05 and q value <= 1.00. This research provides high throughput sequencing data of transcriptome in testicular heat exposure model and lays the foundation for further study on the miRNA in male reproductive diseases related to elevated testicular temperature.

2021-01-29 | GSE165697 | GEO

Signatures of protein and small RNA cargoes in extracellular vesicles of mouse testis

Project description:We report the small RNA transcriptome of testicular extracellular vesicles in mouse testis. We established a testis dissociation protocol to isolate testicular extracellular vesicles. After treatment with proteinase K and RNase A, the RNA inside the extracellular vesicles was extracted and sequenced by small RNA-seq.

2022-01-31 | GSE158402 | GEO

Single-cell sequencing of Klinefelter testicular biopsies

Project description:We have evaluated the transcriptome of different testicular cell types, including germ cells, at single cell level in a testicular biopsy of a man with Klinefelter syndrome (XXY karyotype)

2019-08-30 | GSE130151 | GEO

Transcriptome analysis of testicular cells in wild type (VRK1+/+) and mutant (VRK1-/-) Mus musculus

Project description:Transcriptome analysis of testicular cells in VRK1+/+ and VRK1-/- Mus musculus Gene expression in whole testicular cells from wild type (VRK1+/+) and VRK1-/- mutant Mus musculus, respectively, was measured. Four independent experiment for wild type and mutant, respectively, were performed.

2013-11-21 | E-GEOD-19329 | biostudies-arrayexpress

Transcriptome analysis of testicular cells in wild type (VRK1+/+) and mutant (VRK1-/-) Mus musculus

Project description:Transcriptome analysis of testicular cells in VRK1+/+ and VRK1-/- Mus musculus

2013-11-21 | GSE19329 | GEO

Project description:Testicular Spatial Transcriptome Atlas

| PRJNA668433 | ENA

Project description:Rats testicular tissue Transcriptome

| PRJNA520844 | ENA

Spermatogenomics: correlating testicular gene expression to human male infertility

Project description:Analysis of differential testicular transcriptome in patients with different types of azoospermia.

2020-03-01 | GSE108886 | GEO

Identification of type A spermatogonia specific transcriptome in rainbow trout immature testis

Project description:To identify the transcripts preferentially expressed in type A spermatogonia in rainbow trout immature testis, we compared the transcriptome between type A spermatogonia and testicular somatic cells by microarry analysis. We used fluorescence-activated cell sorting (FACS) to isolate type A spermatogonia or testicular somatic cells from the fishes carrying the transgene, pvasa-GFP, which expresses GFP in spermatogonia. RNA from type A spermatogonia and from testicular somatic cells were hybridized to a microarray after Cy3 labeling.

2012-06-11 | E-GEOD-38647 | biostudies-arrayexpress

Effect of Setx depletion on gene expression in the testis during the first-wave of spermatogenesis

Project description:To investigate the transcriptome of testicular cells in both control and Setx-KO mice (spcar3 mice).

2023-12-31 | GSE224875 | GEO