Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Marine bacterioplankton metagenome based on 16S rDNA and rRNA (2018 December OR2Cr2344 cruise)

PROVIDER: PRJNA1070851 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27780000_1.fastq.gz	Fastqsanger.gz
	SRR27780000_2.fastq.gz	Fastqsanger.gz
	SRR27780100_1.fastq.gz	Fastqsanger.gz
	SRR27780100_2.fastq.gz	Fastqsanger.gz
	SRR27780001_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 384

Similar Datasets

Project description:Marine bacterioplankton metagenome based on 16S rDNA and rRNA (2018 May OR2Cr2304 cruise)

| PRJNA1070367 | ENA

Project description:Marine bacterioplankton metagenome based on 16S rDNA and rRNA (2018 October OR2Cr2334 cruise)

| PRJNA1070704 | ENA

Project description:Marine bacterioplankton metagenome based on 18S rDNA and rRNA (2018 October OR2Cr2334 cruise)

| PRJNA1070850 | ENA

Project description:Marine bacterioplankton metagenome based on 18S rDNA and rRNA (2018 May OR2Cr2304 cruise)

| PRJNA1070398 | ENA

marine metagenome

Project description:Santa Barbara Channel cruise SBDOM11 bacterioplankton 16S rDNA

| PRJNA244090 | ENA

Microarray-based Analysis of Polyamine Transport and Metabolism in the Model Marine Bacterium Silicibacter pomeroyi

Project description:Polyamines, such as putrescine and spermidine, are aliphatic organic compounds with multiple amino groups. They are found ubiquitously in marine systems. However, compared with the extensive studies on the concentration and fate of other dissolved organic nitrogen compounds in seawater, such as dissolved free amino acids (DFAA), investigations of bacterially-mediated polyamine transformations have been rare. Bioinformatic analysis identified genes encoding polyamine transporters in 74 of 109 marine bacterial genomes surveyed, a surprising frequency for a class of organic nitrogen compounds not generally recognized as an important source of carbon and nitrogen for marine bacterioplankton. The genome sequence of marine model bacterium Silicibacter pomeroyi DSS-3 contains a number of genes putatively involved in polyamine use, including six four-gene ATP-binding cassette transport systems. In the present study, polyamine uptake and metabolism by S. pomeroyi was examined to confirm the role of putative polyamine-related genes, and to investigate how well current gene annotations reflect function. A comparative whole-genome microarray approach (Bürgmann et al., 2007) allowed us to identify key genes for transport and metabolism of spermidine in this bacterium, and specify candidate genes for in situ monitoring of polyamine transformations in marine bacterioplankton communities.

2008-12-31 | GSE13781 | GEO

Geotraces EPZT

Project description:Surface seawater ENV solid phase extraction samples collected on the US GEOTRACES EPZT cruise (October-December 2013).

| MSV000080173 | MassIVE

Project description:2018 marian cove 16S rRNA metagenome sequencing

| PRJNA533713 | ENA

Lung microbiome enriched with anaerobes associated with Th17 immune phenotype

Project description:In a prior report, we observed two distinct lung microbiomes in healthy subjects that we termed â??pneumotypesâ??: pneumotypeSPT, characterized by high bacterial load and supraglottic predominant taxa (SPT) such as the anaerobes Prevotella and Veillonella; and pneumotypeBPT, with low bacterial burden and background predominant taxa (BPT) found in the saline lavage and bronchoscope. Here, we determined the prevalence of these two contrasting lung microbiome types, in a multi-center study of healthy subjects. We confirmed that a lower airway microbiome enriched with upper airway microbes (pneumotypeSPT) was present in ~45% of healthy individuals. Cross-sectional Multicenter cohort. BAL of 49 healthy subjects from three cohort had their lower airway microbiome assessed by 16S rDNA sequencing and microbial gene content (metagenome) was computationally inferred from taxonomic assignments. The amplicons from total 100 samples are barcoded; the barcode and other clinical characteristics (e.g. inflammatory biomarkers and metabolome data) for each sample are provided in the 'Pneumotype.sep.Map.A1.txt' file.

2016-03-29 | E-GEOD-74395 | biostudies-arrayexpress

Project description:16S rDNA gene sequences belonging to bacterioplankton

| PRJNA788397 | ENA