Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression profiling in old and young kidneys from wild type mice

ABSTRACT: Gene expression profiling in old and young kidneys from wild type mice

PROVIDER: PRJNA1073848 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27885855.fastq.gz	Fastqsanger.gz
	SRR27885856.fastq.gz	Fastqsanger.gz
	SRR27885857.fastq.gz	Fastqsanger.gz
	SRR27885858.fastq.gz	Fastqsanger.gz
	SRR27885859.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Gene expression profiling in old and young kidneys from wild type mice

Project description:Gene expression by RNA-seq in murine kidneys harvested from 3 month-old and 16 month old wild type mice

2024-04-02 | GSE255148 | GEO

Gene expression profile of grafts in 6-week-old and 12-week-old recipients 24 h after receiving similar donor kidneys

Project description:To investigate the effect of youthful systemic milieu on acute kidney injury in a rat kidney transplantation model based on young (6-week-old) and adult (12-week-old) recipients receiving similar donor kidneys (12-week-old)

2023-06-20 | GSE226680 | GEO

TMT isobaric profiling of young versus old haematopoietic stem cells

Project description:Mass spectrometry was performed with an Orbitrap Fusion Tribrid mass spectrometer (Thermo Scientific) interfaced with an UltiMate 3000 Binary RSLCnano System (Dionex). Proteome Discoverer v.1.4 (Thermo Scientific) with SEQUEST HT search engines was used for the spectra-preprocessing and HCD MS2 spectra were used for peptide identification and quantitation based on TMT reporter ions. TMT isobaric comparison of old versus young haematopoietic stem and progenitor cells. Young 1 and Young 2 are samples 126 and 128 of dataset UTH_1. Old 1 and Old 2 are samples 129 and 130 of UTH_1. Young 3 is sample 131 and Old 3 is sample 130 of dataset UTH_4.

2023-10-16 | MSV000093126 | MassIVE

Transcriptome Profiling of Wild-type vs. A1CF -/- Mouse Whole Kidneys

Project description:Purpose: A1CF is an RNA binding protein that has not been extensively studied on a transcriptome-wide scale. Here we profile the whole kidneys of wild-type and A1cf knockout mice to detect differences in gene expression. Methods: mRNA profiles of 6-8 week old wild-type and A1cf knockout mice were generated by deep sequencing using Illumina HiSeq 2500. Reads that passed quality filters were aligned to mm10 genome and analyzed for differential expression using CuffDiff2 and DESeq2. Results: We mapped reads to the mm10 genome and found a subset of fewer than 500 differentially expressed genes in A1CF deficiency. Conclusions: Our study represents the first transcriptomic profiling of A1CF deficiency in the kidney.

2019-07-01 | GSE108548 | GEO

Transcriptome Profiling of Wild-type vs. A1CF -/- Mouse Whole Kidneys

Project description:Transcriptome Profiling of Wild-type vs. A1CF -/- Mouse Whole Kidneys

| PRJNA427594 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type Young and Old muscle Transcriptomes

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare Young and Old muscles transcriptome profiling (RNA-seq) to optimal high-throughput data analysis Results: Using an optimized data analysis workflow, we mapped about 30 million sequence reads per sample to the mouse genome (build mm10) and identified 24799 genes. Among them, 95.7% of the genes displayed the similar expression level in both young and old muscles.2% of genes (501) were significantly up-regulated and 2.3% of genes (584) were significantly down-regulated. p value <0.05.

2018-03-07 | GSE78147 | GEO

Expression data from wild-type and Robo2 homozygous kidneys

Project description:We used microarrays to detail the global gene expression in tissues from wild-type and Robo2 homozygous kidneys.

2019-09-12 | GSE137298 | GEO

mRNA expression of young, mid-old, and old fibroblasts

Project description:mRNA expression of young, mid-old, and old fibroblasts

| PRJNA971965 | ENA

mRNA expression of young, mid-old, and old fibroblasts

Project description:Examination of the difference in mRNA expression profile between young, mid-old, and old fibroblasts

2023-05-19 | GSE232427 | GEO

Characterisation of young, old and old repopulating microglia in spinal cord and brain of C57BL/6 wild type male mice

Project description:Characterisation of young, old and old repopulating microglia in spinal cord and brain of C57BL/6 wild type male mice