Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Malus pumila var 'Jinhong'

ABSTRACT: Malus pumila var 'Jinhong' Transcriptome

PROVIDER: PRJNA1074127 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27918959_1.fastq.gz	Fastqsanger.gz
	SRR27918959_2.fastq.gz	Fastqsanger.gz
	SRR27918960_1.fastq.gz	Fastqsanger.gz
	SRR27918960_2.fastq.gz	Fastqsanger.gz
	SRR27918961_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Malus pumila

Project description:Malus pumila overview

| PRJNA979318 | ENA

Malus pumila

Project description:Malus pumila Transcriptome or Gene expression

| PRJNA1066126 | ENA

Malus pumila

Project description:Malus pumila Transcriptome or Gene expression

| PRJNA1066895 | ENA

Malus pumila

Project description:Malus pumila Raw sequence reads

| PRJNA978266 | ENA

Malus pumila

Project description:Malus pumila Raw sequence reads

| PRJNA1124641 | ENA

Malus pumila

Project description:Malus pumila Genome sequencing and assembly

| PRJNA979000 | ENA

Malus baccata var. xiaojinensis cultivar:Malus baccata var. xiaojinensis

Project description:Malus baccata var. xiaojinensis cultivar:Malus baccata var. xiaojinensis Transcriptome or Gene expression

| PRJNA392909 | ENA

malus pumila and Vitis vinifera

Project description:Find new viroids through deep sequencing of Malus pumila and Vitis vinifera

| PRJNA207277 | ENA

Malus baccata var. xiaojinensis

Project description:Malus baccata var. xiaojinensis Transcriptome or Gene expression

| PRJNA215017 | ENA

Identification of microRNAs and Their Targets in Ulmus pumila under Salt Stress by High-Throughput Sequencing

Project description:MicroRNAs (miRNAs) are a class of endogenous small RNAs that play important roles in growth, development, and environmental stress response processes in plants. Ulmus pumila is a typical deciduous broadleaved tree species of north temperate, and is widely distributed in central and northern Asia, which has important economic and ecological value. With the spread and aggravate of soil salinisation, salt stress has become a major abiotic stress that highly affects the normal growth and development of U. pumila. However, to date, no investigation into the influence of salt stress on U. pumila miRNAs has been reported. To identify miRNAs and predict their target mRNA genes under salt stress, three small RNA libraries were generated and sequenced from CK (without salt stress), LSS (light salt stress for a short time) and MSL (medium-heavy salt stress for a long time) roots of U. pumila seedlings. Through integrative analysis, 245 conserved miRNAs representing 30 families and 64 novel miRNAs were identified, of which 89 exhibited altered expression level under salt stress, and 232 potential targets for the miRNAs were predicted and annotated in U. pumila. The expressions of six differentially expressed miRNAs were validated by qRT-PCR. These salt responsive miRNAs may play crucial roles in U. pumila defense against salt stress, and our miRNA data provides valuable information regarding further functional analysis of miRNAs involved in salt tolerance of U. pumila and other forest tree species.

2018-12-31 | GSE84937 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data