Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Fundulus diaphanus (banded killifish) genome, fFunDia1

PROVIDER: PRJNA1074739 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
		Other
	SRR29999979_subreads.fastq.gz	Fastqsanger.gz
	SRR29999981_subreads.fastq.gz	Fastqsanger.gz
	SRR29999982_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Project description:Fundulus diaphanus (banded killifish) genome, fFunDia1, sequence data

| PRJNA1140160 | ENA

Fundulus diaphanus isolate:fFunDia1

Project description:Fundulus diaphanus (banded killifish) genome, fFunDia1, haplotype 2

| PRJNA1072163 | ENA

Fundulus diaphanus isolate:fFunDia1

Project description:Fundulus diaphanus (banded killifish) genome, fFunDia1, haplotype 1

| PRJNA1072162 | ENA

Fundulus diaphanus

Project description:Fundulus diaphanus overview

| PRJNA1072179 | ENA

Common mechanism underlies repeated evolution of extreme pollution tolerance

Project description:This is a common-garden experiment comparing the transcriptional response to multiple doses of PCB-126 among multiple populations of the killifish Fundulus heteroclitus

2011-01-15 | E-MTAB-496 | biostudies-arrayexpress

F. heteroclitus 3 Chesapeake population hypoosmotic challenge

Project description:This is a common-garden experiment comparing the transcriptional response to hypo-osmotic acclimation among multiple populations of the killifish Fundulus heteroclitus. Original data are in the archive: E-MTAB-524.additional.zip

2011-02-07 | E-MTAB-524 | biostudies-arrayexpress

Profiling microRNA expression in Atlantic killifish (Fundulus heteroclitus) gill and responses to arsenic and hyperosmotic stress

Project description:The Atlantic killifish (Fundulus heteroclitus), native to estuarine areas of the Atlantic coast of the United States, has become a valuable ecotoxicological model due to its ability to acclimate to rapid environmental changes and adapt to polluted habitats. Killifish respond to rapid increases in salinity with an immediate change in gene expression, as well as long-term remodeling of the gills. Arsenic, a major environmental toxicant, was previously shown to inhibit the ability of killifish gill to respond to a rapid increase in salinity. We characterized miRNA expression in killifish gill under salinity acclimation with and without arsenic and identified a small group of highly expressed, well-conserved miRNAs as well as 16 novel miRNAs not yet identified in other organisms.

2018-12-26 | GSE118062 | GEO

BP oil spill - lab - gill

Project description:In this study we characterize the gill transcriptome changes in Gulf killifish (Fundulus grandis) that coincide with controlled laboratory-based exposure to various concentrations of experimentally-weathered south Louisiana crude oil. Gill transcription was contrasted between doses and across timepoints following dosing.

2014-08-11 | E-MTAB-2834 | biostudies-arrayexpress

BP oil spill - lab - liver

Project description:In this study we characterize the liver transcriptome changes in Gulf killifish (Fundulus grandis) that coincide with controlled laboratory-based exposure to various concentrations of experimentally-weathered south Louisiana crude oil. Liver transcription was contrasted between doses and across timepoints following dosing.

2014-08-13 | E-MTAB-2841 | biostudies-arrayexpress

The heat shock response of killifish (Fundulus heteroclitus): candidate gene and heterologous microarray approaches.

Project description:Subspecies of the Atlantic killifish, Fundulus heteroclitus, differ in their maximum thermal tolerance. To determine whether there is a link between the heat shock response (HSR) and maximum thermal tolerance, we exposed 20ÂºC acclimated killifish from these subspecies to a 2hr heat shock at 34ÂºC and examined gene expression during heat shock and recovery using real time quantitative PCR and a heterologous cDNA microarray designed for salmonid fishes. Keywords: Expression profiling by array Microarray analyses were performed on four individual fish per subspecies of killifish (northern and southern) prior to heat shock (control) and after 60 minutes of heat shock, hybridized (one slide per individual) against a common reference RNA pool composed of an equal amount of RNA from all samples in the analysis.

2010-06-20 | E-GEOD-18792 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data