Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sequencing of apple inter-root microbial amplicons

PROVIDER: PRJNA1080687 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28150014.fastq.gz	Fastqsanger.gz
	SRR28150015.fastq.gz	Fastqsanger.gz
	SRR28150016.fastq.gz	Fastqsanger.gz
	SRR28150017.fastq.gz	Fastqsanger.gz
	SRR28150018.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Microbiome characterization using transfer RNA sequencing

Project description:Here we report a direct tRNA sequencing protocol and software to simultaneously examine the composition and biological activity of naturally occurring microbial communities. Our analysis of mouse gut microbiome with tRNA-seq and 16S ribosomal RNA gene amplicons revealed comparable microbial community structures, and additional physiological insights into the microbiome through tRNA abundance and modifications.

2018-11-09 | GSE100263 | GEO

Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Fusarium proliferatum MR5 infection

Project description:Purpose: The aim of this study was to identify the specific transcriptomic changes in apple root tissue in response to infection by F. Proliferatum.The characterized transcriptome changes during apple root defense responses to F. Proliferatum inoculation should facilitate the identification of the key molecular components, which may differentiate the resistance and susceptibility among apple rootstock germplasm.

2021-04-09 | GSE171688 | GEO

Project description:Plant inter-root microbial diversity

| PRJNA868505 | ENA

Microbial amendmant apple root microbiome

Project description:Microbial amendmant apple root microbiome

| PRJEB73883 | ENA

Project description:Tomato grafting inter-root microbial samples

| PRJNA991109 | ENA

Project description:Inter-root microorganisms

| PRJNA1125197 | ENA

The preceding root system drives the rhizosphere microbiome

Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

2020-03-06 | GSE146427 | GEO

Project description:Inter-root microbial samples (fungi) from grafted tomatoes

| PRJNA991162 | ENA

Project description:bacterial microbial diversity in tobacco inter-root soils

| PRJNA1077602 | ENA

Project description:Inter-root soil microorganisms

| PRJNA1064381 | ENA