Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces hygroscopicus subsp. hygroscopicus strain:DSM 41954

ABSTRACT: Streptomyces hygroscopicus subsp. hygroscopicus strain:DSM 41954 Genome sequencing

PROVIDER: PRJNA1081495 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Streptomyces hygroscopicus 5008 Transcriptome or Gene expression

Project description:The RNA sequencing approach was utilized to carry out a comparative transcriptome analysis between Streptomyces hygroscopicus 5008 wild-type and a genetically engineered strain. The A-factor-like cascade play an important role in the regulation of validamycin biosynthesis by Streptomyces hygroscopicus 5008, and the pleiotropic regulator AdpA-H may positively regulate the transcription of gene cluster for the biosynthesis. shbR1 and shbR3 as the A-factor receptor homolog genes, could repress the transcription of AdpA-H. By tandem deletions of these genes, the production and productivity of validamcyin was significantly enhanced. To explore the effects of the shbR1/R3 double deletion of the overall cellular metabolism, the RNA sequencing approach was utilized to carry out a comparative transcriptome analysis between wild-type and shbR1/shbR3 double mutant (genetically engineered strain).

2014-05-31 | GSE58115 | GEO

Streptomyces hygroscopicus subsp. hygroscopicus strain:5-4

Project description:Streptomyces hygroscopicus subsp. hygroscopicus strain:5-4 Genome sequencing and assembly

| PRJNA665863 | ENA

Streptomyces hygroscopicus subsp. hygroscopicus strain:NBRC 13472

Project description:Streptomyces hygroscopicus subsp. hygroscopicus NBRC 13472 genome sequencing project

| PRJDB3201 | ENA

Streptomyces hygroscopicus subsp. hygroscopicus strain:NBRC 16556

Project description:Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556 genome sequencing project

| PRJDB3202 | ENA

Streptomyces hygroscopicus 5008 Transcriptome or Gene expression

2014-05-31 | E-GEOD-58115 | biostudies-arrayexpress

Streptomyces hygroscopicus subsp. jinggangensis 5008

Project description:Streptomyces hygroscopicus subsp. jinggangensis 5008 Genome sequencing

| PRJNA81087 | ENA

Streptomyces hygroscopicus subsp. jinggangensis TL01

Project description:Streptomyces hygroscopicus subsp. jinggangensis TL01 Genome sequencing

| PRJNA169410 | ENA

Transcriptome analysis of collagen-adhered S. gallolyticus subsp. gallolyticus [DSM 16831]

Project description:Streptococcus gallolyticus subsp. gallolyticus is a commensal of the human gastrointestinal tract and a pathogen of infective endocarditis and other biofilm-associated infections with exposed collagen. Therefore, this study focuses on the characterization of the biofilm formation and collagen adhesion of S. gallolyticus subsp. gallolyticus under different conditions. It has been observed that lysozyme triggers biofilm formation divergently in the analyzed S. gallolyticus subsp. gallolyticus strains. The transcriptome analysis was performed for two strains which form more biofilm in the presence of lysozyme. Lysozyme leads to higher expression of genes of transcription and translation, of the dlt operon (cell wall modification), of hydrogen peroxide resistance proteins and of two immunity proteins which could be involved in biofilm formation. Furthermore, the adhesion ability of 73 different S. gallolyticus subsp. gallolyticus strains to collagen type I and IV was analyzed. High adhesion ability was observed for the strain UCN 34, whereas the strain DSM 16831 adhered only marginally to collagen. The full genome microarray analysis revealed strain-dependent gene expression due to adhesion. The expression of genes of a transposon and a phage region in strain DSM 16831 were increased, which corresponds to lateral gene transfer. Adherence to collagen leads to a change in the expression of genes of nutrients uptake in the strain UCN 34.

2017-05-17 | GSE98953 | GEO

Streptomyces hygroscopicus

Project description:Streptomyces hygroscopicus overview

| PRJNA37181 | ENA

Streptomyces hygroscopicus subsp. limoneus strain:KCTC 1717

Project description:Streptomyces hygroscopicus subsp. limoneus strain:KCTC 1717 Genome sequencing and assembly

| PRJNA302679 | ENA