Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingobium aquiterrae strain:DSM 106441

ABSTRACT: Sphingobium aquiterrae strain:DSM 106441 Genome sequencing and assembly

PROVIDER: PRJNA1082231 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Sphingobium aromaticiconvertens strain:DSM 12677

Project description:Sphingobium aromaticiconvertens strain:DSM 12677 Genome sequencing and assembly

| PRJNA1082233 | ENA

Sphingobium aromaticiconvertens strain:DSM 12677

Project description:Sphingobium aromaticiconvertens strain:DSM 12677 Genome sequencing and assembly

| PRJNA1082209 | ENA

Sphingobium aromaticivastans strain:DSM 105181

Project description:Sphingobium aromaticivastans strain:DSM 105181 Genome sequencing and assembly

| PRJNA1082211 | ENA

Sphingobium mellinum strain:DSM 7458

Project description:Sphingobium mellinum strain:DSM 7458 Genome sequencing and assembly

| PRJNA1082212 | ENA

Sphingobium indicum strain:DSM 26779

Project description:Sphingobium indicum strain:DSM 26779 Genome sequencing and assembly

| PRJNA520821 | ENA

Sphingobium limneticum strain:DSM 25076

Project description:Sphingobium limneticum strain:DSM 25076 Genome sequencing and assembly

| PRJNA566363 | ENA

Sphingobium fuliginis strain:DSM 18781

Project description:Sphingobium fuliginis strain:DSM 18781 Genome sequencing and assembly

| PRJNA520823 | ENA

Sphingobium Nickel resistance analysis by RNA-seq approach

Project description:Nickel is an essential component of many eukaryotic and prokaryotic metallo-enzymes. Due to its employment in many industrial applications, wastewaters from industrial plants often contain millimolar concentrations of Ni2+ that are toxic and life-threatening for many organism. Several lines of preliminary evidence suggest that members of the genus Sphingobium are able to grow in the presence of high concentrations of metal ions. We have isolated a novel Sphingobium strain (sp. ba1) able to grow in the presence of high concentrations (up to 20 mM) of NiCl2. Sequencing of its genome allowed the identification of several genes coding for proteins potentially involved in efflux-mediated resistance mechanisms. Here we use the RNA-seq approach to analyze the response of the Sphingobium sp. ba1 strain to high concentrations (10 mM) of Ni ions. Transcriptomic data show the differential expression of about one-hundred and twenty genes, most of which are up-regulated and encode proteins such as membrane proteins and components of metal efflux systems, enzymes involved in oxidative stress responses (catalases, peroxidases) and signal transduction systems.

2017-07-03 | E-MTAB-5828 | biostudies-arrayexpress

Sphingobium olei strain:DSM 18999 | isolate:DSM 18999

Project description:Sphingobium olei DSM 18999 genome sequencing

| PRJNA583241 | ENA

Sphingobium xanthum strain:DSM 100901 | isolate:DSM 100901

Project description:Sphingobium xanthum DSM 100901 genome sequencing

| PRJNA546792 | ENA