Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingomonas aquatica strain:LMG 28596

ABSTRACT: Sphingomonas aquatica strain:LMG 28596 Genome sequencing and assembly

PROVIDER: PRJNA1082420 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Expression analysis of motile strain of Sphingomonas sp. A1

Project description:Investigation of whole genome gene expression level in motile strain of Sphingomonas. sp A1 All flagellar genes in motile strain of Sphingomonas. sp A1 are highly transcribed.

2014-11-01 | GSE62901 | GEO

Schlegelella aquatica strain:LMG 23380

Project description:Schlegelella aquatica strain:LMG 23380 Genome sequencing

| PRJNA895355 | ENA

Sphingomonas kyungheensis strain:LMG 26582

Project description:Sphingomonas kyungheensis strain:LMG 26582 Genome sequencing and assembly

| PRJNA1082470 | ENA

Sphingomonas agri strain:LMG 29563

Project description:Sphingomonas agri strain:LMG 29563 Genome sequencing

| PRJNA1082410 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Expression analysis of motile strain of Sphingomonas sp. A1

Project description:Investigation of whole genome gene expression level in motile strain of Sphingomonas. sp A1 All flagellar genes in motile strain of Sphingomonas. sp A1 are highly transcribed. A two chip study using total RNA recovered from wild-type and motile strains of Sphingomonas. sp A1 grown in 0.5% alginate medium.

2014-11-01 | E-GEOD-62901 | biostudies-arrayexpress

Tabrizicola aquatica strain:RCRI19

Project description:Tabrizicola aquatica strain:RCRI19 Genome sequencing and assembly

| PRJNA422011 | ENA

Ideonella aquatica strain:4Y11

Project description:Ideonella aquatica strain:4Y11 Genome sequencing and assembly

| PRJNA720807 | ENA

Paracnuella aquatica strain:N24

Project description:Paracnuella aquatica strain:N24 Genome sequencing and assembly

| PRJNA478626 | ENA

Perlucidibaca aquatica strain:BK296

Project description:Perlucidibaca aquatica strain:BK296 Genome sequencing and assembly