Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Trichosurus vulpecula RNA_Seq

PROVIDER: PRJNA1083711 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28225687_1.fastq.gz	Fastqsanger.gz
	SRR28225687_2.fastq.gz	Fastqsanger.gz
	SRR28225688_1.fastq.gz	Fastqsanger.gz
	SRR28225688_2.fastq.gz	Fastqsanger.gz
	SRR28225689_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Trichosurus vulpecula

Project description:Trichosurus vulpecula overview

| PRJNA562330 | ENA

Coat colour of brushtail possum

Project description:The fur of the common brushtail possum (Trichosurus vulpecula), a model marsupial, is lightweight, soft and has superior insulation properties. Two predominate fur colours exisit: grey or black. RNA-sequencing of skin from grey (n=3) and black (n=3) possums was performed to investigate gene expression changes between these colour morphs.

2024-03-10 | GSE250237 | GEO

Trichosurus vulpecula

Project description:Trichosurus vulpecula Raw sequence reads

| PRJNA587034 | ENA

Project description:Trichosurus vulpecula (Brushtail possum) genome, mTriVul1

| PRJNA562248 | ENA

Project description:Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, sequence data

| PRJNA1008656 | ENA

Trichosurus vulpecula isolate:mTriVul1

Project description:Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, primary haplotype

| PRJNA562014 | ENA

Trichosurus vulpecula isolate:mTriVul1

Project description:Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, alternate haplotype

| PRJNA562013 | ENA

Project description:Transcriptome of the New Zealand brushtail possum (Trichosurus vulpecula)

| PRJNA525264 | ENA

The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genesed genes [WGBS]

Project description:The brushtail possum, Trichosurus vulpecula, is threatened in parts of its native range in Australia, but has also become a devastating mammalian pest following introduction into New Zealand from the mid 1800s. We have completed the first chromosome-level assembly of the possum genome and, using nuclear and mitochondrial analyses, traced southern New Zealand possums to distinct Tasmanian and mainland Australian subspecies, which have subsequently hybridised. This admixture is reflected in high levels of genetic diversity within New Zealand populations despite a founding bottleneck. Functional genomics revealed unique adaptations to altricial birth and extending weaning, including novel chemo-sensory genes, and at least four genes with imprinted, parent-specific expression not yet detected in other species (MLH1, EPM2AIP1, UBP1 and GPX7). We found that reprogramming of possum germline imprints and the wider epigenome was similar to eutherian mammals, except onset occurs after birth. Together, our data and analysis is useful for genetic-based control and conservation of possums, and contributes to understanding of the evolution of novel mammalian epigenetic traits such as germline methylation erasure and genomic imprinting.

2022-11-29 | GSE218734 | GEO

The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes [RNA-seq]

2022-11-29 | GSE218695 | GEO