Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: S. thunbergii epiphytic bacteria and bacterial communities in environmental seawater in different seasons

PROVIDER: PRJNA1084223 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28260600_1.fastq.gz	Fastqsanger.gz
	SRR28260600_2.fastq.gz	Fastqsanger.gz
	SRR28260601_1.fastq.gz	Fastqsanger.gz
	SRR28260601_2.fastq.gz	Fastqsanger.gz
	SRR28260602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 128

Similar Datasets

Project description:.S. thunbergii epiphytic bacteria and environmental seawater bacterial communities in different sea area_2

| PRJNA1108438 | ENA

Project description:S. thunbergii epiphytic bacteria and environmental seawater bacterial communities in different sea area

| PRJNA1084184 | ENA

Project description:S. thunbergii epiphytic bacteria and environmental seawater bacterial communities in different life cycle stage

| PRJNA1084253 | ENA

Project description:S. thunbergii epiphytic bacteria

| PRJNA1065297 | ENA

Project description:Epiphytic bacteria of Sargassum thunbergii

| PRJNA836712 | ENA

Project description:Community structure of endophytic bacteria and epiphytic bacteria of Sargassum thunbergii

| PRJNA835680 | ENA

Sargassum thunbergii.

Project description:epiphytic bacteria of receptacles of Sargassum thunbergii. Raw sequence reads

| PRJNA1086629 | ENA

Microbial activities associated with human intestinal mucosal biofilms change mRNAs and microRNAs to promote carcinogenesis in mice [RNA]

Project description:Disrupted interactions between host and intestinal bacteria are implicated in the development of colorectal cancer (CRC). However, the functional impacts of these inter-kingdom interactions remain poorly defined. To examine this interplay, we performed mouse and microbiota RNA-sequencing on colon tissue from germ-free (GF) and gnotobiotic ApcMin/+;Il10-/- mice associated with microbes from biofilm-positive human CRC tumor (BT) and biofilm-negative healthy (BX) tissues. The bacteria in BT mice differentially expressed >2,900 genes related to bacterial secretion, virulence and biofilms, but only affected 62 host genes. Importantly, the bacterial communities from BT mice were transmissible and carcinogenic when administered to a new GF ApcMin/+;Il10-/- cohort, maintaining a set of 13 bacterial genera. Our findings suggest complex interactions within bacterial communities affecting bacterial composition and CRC development.

2019-12-30 | GSE108156 | GEO

RNA-seq Transcriptional Profiling of Herbaspirillum seropedicae Colonizing Bread Wheat (Triticum aestivum) Roots.

Project description:H. seropedicae is a diazotrophic and endophytic bacterium that associates with economically important grasses promoting plant growth and increasing productivity. To identify genes related to bacterial ability to colonize and promote plant growth wheat seedlings growing hydroponically in Hoaglandâs medium were inoculated with H. seropedicae the bacteria and incubated for 3 days. mRNA from the bacteria present in the root surface and in the plant medium were purified, depleted from rRNA and used for RNA-seq profiling. RT-qPCR analyses were conducted to confirm regulation of selected genes. Comparison of RNA profile of bacteria attached to the root and planktonic revealed an extensive metabolic adaptation to the epiphytic life style.

2016-07-03 | E-MTAB-3646 | biostudies-arrayexpress

Specifically-expressed genes of Bursaphelenchus xylophilus involved in the nematode’s early interaction with pine trees

Project description:This study compared the different gene expression of Bursaphelenchus xylophilus in two growth conditions (growing on Botrytis cinerea and inoculating Pinus thunbergii). The goal was to analyze the specifically-expressed genes of the pine wood nematode involved in the early interaction between B. xylophilus and P. thunbergii and screen the pathogenesis related genes of B. xylophilus.

2013-09-03 | GSE50481 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data