Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S V1V3 sequencing of cold-water coral Lophelia pertusa (Desmophyllum pertusum) samples under warming temperatures

PROVIDER: PRJNA1085650 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28290800_1.fastq.gz	Fastqsanger.gz
	SRR28290800_2.fastq.gz	Fastqsanger.gz
	SRR28290801_1.fastq.gz	Fastqsanger.gz
	SRR28290801_2.fastq.gz	Fastqsanger.gz
	SRR28290802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 260

Similar Datasets

Coral metagenome

Project description:Cold water coral microbiomes: Lophelia pertusa

| PRJNA305617 | ENA

16S V1V3 sequencing of cold-water coral Lophelia pertusa (Desmophyllum pertusum) samples under warming temperatures

Project description:The 16S gene marker has been chosen to target the bacterial microbiome associated to cold-water coral Lophelia pertusa in the Atlantic Ocan under warming temperatures

| PRJEB73632 | ENA

Lophelia pertusa response to low pH

Project description:RNA expression patterns of Lophelia pertusa to low pH are analyzed and presented to understand how the corals will respond to future environmental conditions

2020-06-25 | GSE147297 | GEO

Desmophyllum pertusum

Project description:Lophelia pertusa overview

| PRJNA77635 | ENA

Lophelia pertusa

Project description:Lophelia pertusa Metagenomes

| PRJNA471489 | ENA

Project description:Cold-water coral microbiomes (Acanthogorgia spp. Desmophyllum dianthus, and Lophelia pertusa) from the Gulf of Mexico and Atlantic Ocean off the southeast coast of the United States

| PRJNA699458 | ENA

Desmophyllum pertusum

Project description:Lophelia pertusa Genome Sequencing

| PRJNA76963 | ENA

Surviving climate change – the role of acclimatization in reef-building corals [16S]

Project description:Branching coral species like the Caribbean Acroporids are long lived and reproduce asexually via breakage of branches. Fragmentation is the dominant mode of local population maintenance for these corals across much of their range. Thus, large genets with many member ramets (colonies) are common. Each of the ramets experiences different microenvironments, especially with respect to light and water flow. Here, we investigate whether colonies that are members of the same genet have different epigenomes because of differences in their microenvironments. The Florida Keys experienced a large- scale coral bleaching event in 2014-2015 caused by high water temperatures. During the event, ramets of the same coral genet bleached differently. Previous work had shown that this was unlikely to be due to their eukaryotic algal symbionts (Symbiodinium ‘fitti’) because each genet of this coral species typically harbors a single strain of S. ‘fitti’. Characterization of the microbiome via 16S tag sequencing did not provide evidence for a central role of microbiome variation in determining bleaching response. Instead, epigenetic changes were significantly correlated with the host’s genetic background, the position of the sampled polyps within the colonies (e.g. tip versus base of colony), and differences in the colonies’ condition during the bleaching event. We conclude that microenvironmental differences in growing conditions led to long-term changes in the way the ramets methylated their genomes and thus to a differential bleaching response.

2020-12-18 | GSE124256 | GEO