Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Rhinophrynus dorsalis (Mexican burrowing frog) genome, aRhiDor1

PROVIDER: PRJNA1086928 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
		Other
	SRR29952149_subreads.fastq.gz	Fastqsanger.gz
	SRR29952150_subreads.fastq.gz	Fastqsanger.gz
	SRR29952151_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 21

Similar Datasets

Rhinophrynus dorsalis isolate:aRhiDor1

Project description:Rhinophrynus dorsalis (Mexican burrowing frog) genome, aRhiDor1, haplotype 1

| PRJNA1085474 | ENA

Project description:Rhinophrynus dorsalis (Mexican burrowing frog) genome, aRhiDor1, sequence data

| PRJNA1139352 | ENA

Rhinophrynus dorsalis isolate:aRhiDor1

Project description:Rhinophrynus dorsalis (Mexican burrowing frog) genome, aRhiDor1, haplotype 2

| PRJNA1085475 | ENA

Rhinophrynus dorsalis

Project description:Rhinophrynus dorsalis

| PRJNA1183767 | ENA

Rhinophrynus dorsalis

Project description:Rhinophrynus dorsalis mitochondrial genome sequencing project

| PRJNA50485 | ENA

Rhinophrynus dorsalis

Project description:The Mexican burrowing toad

| PRJNA68377 | ENA

Rhinophrynus dorsalis

Project description:Rhinophrynus dorsalis Transcriptome or Gene expression

| PRJNA86853 | ENA

The widely conserved microRNA, miR-1-3p, is a male-determining factor in the oriental fruit fly, Bactrocera dorsalis

Project description:We constructed three small RNA libraries from embryos at 5, 6 and 7 post-oviposition (hpo) of Bactrocera dorsalis for deep sequencing. The data analysis revealed 147 known and 103 novel miRNAs from these libraries.

2019-07-04 | GSE117310 | GEO

In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.

Project description:We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesodermal stem cells and determine their bipotential fates in the Xenopus tropicalis frog embryo.

2013-09-19 | GSE48560 | GEO

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

Project description:Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably the genus Xenopus. Here we report a high-quality reference genome sequence for the western clawed frog, Xenopus tropicalis, along with draft chromosome-scale sequences of three distantly related emerging model frog species, Eleutherodactylus coqui, Engystomops pustulosus and Hymenochirus boettgeri. Frog chromosomes have remained remarkably stable since the Mesozoic Era, with limited Robertsonian (i.e., centric) translocations and end-to-end fusions found among the smaller chromosomes. Conservation of synteny includes conservation of centromere locations, marked by centromeric tandem repeats associated with Cenp-a binding, surrounded by pericentromeric LINE/L1 elements. We explored chromosome structure across frogs, using a dense meiotic linkage map for X. tropicalis and chromatin conformation capture (Hi-C) data for all species. Abundant satellite repeats occupy the unusually long (~20 megabase) terminal regions of each chromosome that coincide with high rates of recombination. Both embryonic and differentiated cells show reproducible association of centromeric chromatin, and of telomeres, reflecting a Rabl-like configuration. Our comparative analyses reveal 13 conserved ancestral anuran chromosomes from which contemporary frog genomes were constructed.

2022-03-30 | GSE199671 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data