Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: PCR-GBS Sequencing of exome capture derived markers in CI5791 x Tifang F2 population

PROVIDER: PRJNA1088752 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28364300.fastq.gz	Fastqsanger.gz
	SRR28364400.fastq.gz	Fastqsanger.gz
	SRR28364500.fastq.gz	Fastqsanger.gz
	SRR28364600.fastq.gz	Fastqsanger.gz
	SRR28387700.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 732

Similar Datasets

Project description:PCR-GBS Sequencing of 50K derived markers in CI5791 x Tifang F2 population

| PRJNA1088747 | ENA

Project description:PCR-GBS Sequencing of 9K derived markers in CI5791 x Tifang F2 population

| PRJNA1088606 | ENA

Project description:Exome Capture of barley line CI5791 and CI5791 gamma3 and gamm8 mutants

| PRJNA686994 | ENA

Project description:GBS analysis on maize F2 population

| PRJNA628111 | ENA

Chondrosarcoma Validation Study

Project description:Agilent whole exome hybridisation capture was performed on genomic DNA derived from Chondrosarcoma cancer and matched normal DNA from the same patients. Next Generation sequencing performed on the resulting exome libraries and mapped to build 37 of the human reference genome to facilitate the identification of novel cancer genes. Now we aim to re find and validate the findings of those exome libraries using bespoke pulldown methods and sequencing the products.

2016-05-17 | E-ERAD-37 | biostudies-arrayexpress

Project description:GBS of F2 mapping population derived from crossing Barke x luteostrians

| PRJEB39634 | ENA

Project description:GBS of F2 mapping population derived from crossing Morex x luteostrians

| PRJEB39633 | ENA

Whole-exome sequencing (WES) of single glands from opposite side of two colorectal tumors and WES of colorectal cancer xenografts derived from single cell culture to study tumor growth dynamics

Project description:Single Gland Whole-exome sequencing: building on our prior description of multi-region WES of colorectal tumors and targeted single gland sequencing (E-MTAB-2247), we performed WES of multiple single glands from different sides (right: A and left: B) of two tumors in this study (tumor O and U) on the illumina platform using the Agilent SureSelect 2.0 or illumina Nextera Rapid Capture Exome kit (SureSelect or NRCE, as indicated in the naming of fastq files). Colorectal Cancer Xenograft Whole-exome sequencing: The HCT116 and LoVo Mismatch-Repair-deficient colorectal adenocarcinoma cell lines were obtained from the ATCC and cultured under standard conditions. For both cell lines, a single âfoundingâ cell was cloned and expanded in vitro to ~6M cells. Two aliquots of ~1M cells were subcutaneously injected into opposite flanks (right and left) of a nude mouse and tumors allowed to reach a size of ~1B cells (1cm3) before the animal was sacrificed. Tumor tissue was collected separately from the right and left lesions and DNA was extracted for WES using the illumina TruSeq Exome kit or Nextera Rapid Capture Exome expanded Kits (Truseq or NRCEe), as was DNA from the first passage population (a polyclonal tissue culture for HCT116 and a polyclonal xenograft sample for LoVo), which were employed as a control to study mutation accumulation in culture and post xenotransplantation.

2017-05-01 | E-MTAB-5547 | biostudies-arrayexpress

Project description:GMS of CI5791 x Golden Promise F2

| PRJNA1088849 | ENA

Project description:Papaya GBS ('RB2'x 'Sunrise Solo' F2 population)

| PRJNA544124 | ENA