Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Depth Profile Metatranscriptomes from the North Pacific Ocean (Gradients 3)

PROVIDER: PRJNA1090467 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28409842_1.fastq.gz	Fastqsanger.gz
	SRR28409842_2.fastq.gz	Fastqsanger.gz
	SRR28409843_1.fastq.gz	Fastqsanger.gz
	SRR28409843_2.fastq.gz	Fastqsanger.gz
	SRR28409844_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

Project description:Depth Profile Eukaryotic Metatranscriptomes from the North Pacific Ocean (SCOPE-G3-depth)

| PRJNA1148215 | ENA

Project description:Metatranscriptomes from the North Pacific Ocean (Gradients 3)

| PRJNA1091352 | ENA

Eukaryotic Metatranscriptomes from the North Pacific Ocean (Gradients 1)

Project description:Eukaryotic Metatranscriptomes from the North Pacific Ocean (Gradients 1)

| PRJNA690573 | ENA

Project description:Diel Metatranscriptomes from the North Pacific Ocean (Gradients 3)

| PRJNA1090899 | ENA

Project description:Eukaryotic Metatranscriptomes from the North Pacific Ocean (SCOPE-Gradients 2)

| PRJNA1076191 | ENA

Project description:Eukaryotic Metatranscriptomes from the North Pacific Ocean (SCOPE-Gradients 3)

| PRJNA1076851 | ENA

The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean

Project description:Untargeted proteomics from a 5,000 km+ transect across the central Pacific Ocean from Hawaii to Tahiti. The expedition crossed multiple biogeochemical provinces, inlcuding the oligotrophic North Pacific Subtropical Gyre, the extremety of the Eastern Tropical North Pacific Oxygen Deficient Zone, and the relatively productive equatorial region associated with upwelling. This dataset focuses on the microbial fraction (0.2-3.0 micrometer filter size) and the microbial community dynamics across these biogeochemical provinces, from the surface oceance to the mesopelagic (1,250 m depth maximum).

2022-08-31 | PXD030684 | Pride

seawater metagenome

Project description:Prokaryotic Metatranscriptomes from the North Pacific (Gradients 1.0)

| PRJNA492143 | ENA

Project description:Whole-Community Metatranscriptomes from the North Pacific (Gradients 2)

| PRJNA816919 | ENA

Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre

Project description:Marine microbial communities are critical for biogeochemical cycles and the productivity of ocean ecosystems. Primary productivity, at the base of marine food webs, is constrained by nutrient availability in the surface ocean, and nutrient advection from deeper waters can fuel photosynthesis. In this study, we compared the transcriptional responses by surface microbial communities after experimental deep water mixing to the transcriptional patterns of in situ microbial communities collected with high-resolution automated sampling during a bloom in the North Pacific Subtropical Gyre. Transcriptional responses were assayed with the MicroTOOLs (Microbiological Targets for Ocean Observing Laboratories) marine environmental microarray, which targets all three domains of life and viruses. The experiments showed that mixing of deep and surface waters substantially affects the transcription of photosystem and nutrient response genes among photosynthetic taxa within 24 hours, and that there are specific responses associated with the addition of deep water containing particles (organisms and detritus) compared to filtered deep water. In situ gene transcription was most similar to that in surface water experiments with deep water additions, showing that in situ populations were affected by mixing of nutrients at the six sampling sites. Together, these results show the value of targeted metatranscriptomes for assessing the physiological status of complex microbial communities.

2018-09-03 | GSE109218 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data