Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: IS-PRM for proteogenomic isoform discovery

PROVIDER: PRJNA1090880 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28437818_subreads.fastq.gz	Fastqsanger.gz
	SRR28421254_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Long-read Proteogenomics Internal Standard triggered PRM (LRP-IS-PRM)

Project description:Long-read proteogenomic data was used to create sample-matched protein database for WTC11 sample. This includes many potential alternative protein isoforms (major and minor isoforms) per gene. The IS-PRM method called Tomahto was tested versus DDA to demonstrate improved coverage of isoform-specific peptides. We called this overall method of long-read RNA informed Tomahto targeting LRP-IS-PRM and used it for protein-level evidence of multiple isoforms derived from alternative splicing.

2024-07-17 | PXD050904 | Pride

Long-read Proteogenomics Internal Standard triggered PRM (LRP-IS-PRM)

2024-07-17 | PXD050909 | Pride

LoRID

Project description:Long Read Isoform Discovery Pipeline

| PRJEB75906 | ENA

E-PROT-101

Project description:Biomarkers discovery for Colorectal cancer

2023-06-21 | E-PROT-101 | ExpressionAtlas

E-PROT-100

Project description:Biomarkers discovery for Colorectal cancer liver metastasis

2023-06-21 | E-PROT-100 | ExpressionAtlas

Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis

Project description:Colorectal cancer (CRC) is the third most common cancer worldwide and liver metastasis remains the major cause of death in CRC. Extensive genomic analysis provided valuable insight into the pathogenesis and progression of CRC. However, the major proteogenomic characterization of CRC liver metastasis is still unknown. We investigated proteogenomic characterization and performed comprehensive integrative genomic analysis of human colorectal cancer liver metastasis.

2019-12-27 | GSE93286 | GEO

E-GEOD-52227

Project description:Discovery of genes involved in facial midline specification

2015-07-27 | E-GEOD-52227 | ExpressionAtlas

E-MTAB-2764

Project description:SNP Discovery in Nine Lines of Cultivated Barley

2016-01-08 | E-MTAB-2764 | ExpressionAtlas

Prm

Project description:Drosophila melanogaster Prm, Paramyosin, is differentially expressed in 21 experiment(s);

| FBgn0003149 | ExpressionAtlas

Prm

Project description:Drosophila melanogaster Prm, Paramyosin, is expressed in 3 baseline experiment(s);