Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: GBS Data of Mapping Population from a cross between NCEBR-2 and PI 270443

PROVIDER: PRJNA1099137 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28715100.fastq.gz	Fastqsanger.gz
	SRR28715101.fastq.gz	Fastqsanger.gz
	SRR28715102.fastq.gz	Fastqsanger.gz
	SRR28715103.fastq.gz	Fastqsanger.gz
	SRR28715104.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 124

Similar Datasets

Project description:Tropical Pumpkin mapping population GBS data

| PRJNA483262 | ENA

High-density genetic map and genome-wide associaation studies of floral color traits in Phalaenopsis orchids

Project description:The F1 population of Phalaenopsis Intermedia, which established from the cross between P. equestris and P. aphrodite was applied to build a high-density genetic map based on SSRs and SNPs from GBS methodology, with the digestion of by Hinp1 I and Hae III. In addition, another GBS was performed with enzymes ApeK I and Hae II to increase the SNP number for the GWAS analysis. We identified 10 SNPs highly associated with floral aesthetic trait, and among them, 4 were associated with flower color related. Genes with function related to anthocyanin biosynthesis were identified as the candidate genes. In addition, the flowering time-related gene SOC1 may contribute to flower color regulation in our discovery.

2022-03-09 | GSE176215 | GEO

Brassica napus var. napus cultivar:Wilhelmsburger

Project description:GBS data of a Brassica napus (Wilhelmsburger/ECD10) mapping population

| PRJNA945869 | ENA

Project description:GBS of Urochloa humidicola mapping population

| PRJNA703438 | ENA

Project description:Finger millet F2 mapping population (MD20 X Okhale1) GBS sequencing data

| PRJNA445435 | ENA

E-GEOD-60823

Project description:Expression data from +Pi and -Pi treeatment between WT and spx1spx2 double mutant

2015-05-14 | E-GEOD-60823 | ExpressionAtlas

Gene expression data of micro RNA from skeletal muscle sample of F2 population based German Landrace (DL) and Pietrain (Pi) pig breeds

Project description:Gene expression data of micro RNA from skeletal muscle samples of F2 population based DL and Pi F2 63 days post conception (dpc).

2021-08-31 | GSE162755 | GEO

Prenatal skeletal muscle transcriptome with intrauterine growth restriction in pigs [miRNA]

Project description:Gene expression data of micro RNA from skeletal muscle samples of F2 population based DL and Pi F2 63 days post conception (dpc).

2021-06-02 | GSE169093 | GEO

Project description:GBS sequencing of a perennial sunflower mapping population

| PRJNA428360 | ENA

Transcription profiling of wheat expression level polymorphism study parental genotypes 2 biological reps

Project description:The use of statistical tools established for the genetic analysis of quantitative traits can be applied to gene expression data. Quantitative trait loci (QTL) analysis can associate expression of genes or groups of genes with particular genomic regions and thereby identify regions that play a role in the regulation of gene expression. A segregating population of 41 doubled haploid (DH) lines from the hard red spring wheat cross RL4452 x AC Domain was used. This population had previously been mapped with microsatellites and includes a full QTL analysis for agronomic and seed quality traits. Expression analysis from 5 day post anthesis developing seed was conducted on 39 of the 41 DH lines using the Affymetrix wheat array. Expression analysis of developing seeds from field grown material identified 1,327 sequences represented by Affymetrix probe sets whose expression varied significantly between genotypes of the population. A sub-set of 378 transcripts were identified that each mapped to a single chromosome interval illustrating that major expression QTLs can be found in wheat. Genomic regions corresponding to multiple expression QTLs were identified that were coincident with previous identified seed quality trait QTL. These regions may be important regulatory regions governing economically important traits. Comparison of expression mapping data with physical mapping for a sub-set of sequences showed that both cis and trans acting expression QTLs were present. Experiment Overall Design: The two parental genotypes of mapping population RL4452 x AC Domain with 2 biological replicates per genotype. Grown in the field together with the mapping population.

2008-06-13 | E-GEOD-4929 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data