Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Constructed wetlands microbial community diversity

PROVIDER: PRJNA1100270 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28720282_1.fastq.gz	Fastqsanger.gz
	SRR28720282_2.fastq.gz	Fastqsanger.gz
	SRR28720283_1.fastq.gz	Fastqsanger.gz
	SRR28720283_2.fastq.gz	Fastqsanger.gz
	SRR28720284_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

wetland metagenome

Project description:Microbial community diversity in constructed wetlands.

| PRJNA232103 | ENA

Project description:Constructed wetlands microbial community

| PRJNA1101102 | ENA

Project description:Microbial diversity in constructed wetlands

| PRJNA560488 | ENA

Project description:Microbial diversity in constructed wetlands

| PRJNA1188043 | ENA

Project description:Bacterial diversity within Constructed wetlands

| PRJNA1077134 | ENA

Project description:Studies of microbial diversity in constructed wetlands metagenome

| PRJNA786065 | ENA

Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes are Widespread and Core Microbiota in Low-Sulfate Peatlands

Project description:Peatlands of the Lehstenbach catchment (Germany) house so far unidentified microorganisms with phylogenetically novel variants of the dissimilatory (bi)sulfite reductase genes dsrAB. These genes are characteristic for microorganisms that reduce sulfate, sulfite, or some organosulfonates for energy conservation, but can also be present in anaerobic syntrophs. However, nothing is currently known regarding the abundance, community dynamics, and biogeography of these dsrAB-carrying microorganisms in peatlands. To tackle these issues, soils from a Lehstenbach catchment site (Schlöppnerbrunnen II fen) from different depths were sampled at three time points over a six-year period to analyze the diversity and distribution of dsrAB-containing microorganisms by a newly developed functional gene microarray and quantitative PCR assays. Members of novel, uncultivated dsrAB lineages (approximately representing species-level groups) (i) dominated a temporally stable but spatially structured dsrAB community and (ii) represented ‘core’ members (up to 1-1.7% relative abundance) of the autochthonous microbial community in this fen. In addition, denaturing gradient gel electrophoresis (DGGE)- and clone library-based comparison of the dsrAB diversity in soils from a wet meadow, three bogs, and five fens of various geographic locations (distance ~1-400 km), identified one Syntrophobacter-related and nine novel dsrAB lineages to be widespread in low-sulfate peatlands. Signatures of biogeography in dsrB-DGGE data were not correlated with geographic distance but could largely be explained by soil pH and wetland type, implying that distribution of dsrAB-carrying microorganisms in wetlands on the scale of a few hundred kilometers is not limited by dispersal but determined by contemporary environmental conditions. 36 dsrAB clones for chip evaluation, 33 hybridizations of labeled dsrAB RNA from environmental peatsoil samples

2010-11-26 | E-GEOD-24582 | biostudies-arrayexpress

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River. Three groups of samples, A, B and C. Every group has 3 replicates.

2016-08-02 | E-GEOD-85064 | biostudies-arrayexpress

Project description:microbial diversity on iron/manganese ore-based constructed wetlands

| PRJNA910846 | ENA

Project description:Microbial diversity studies of sediments in semi-constructed wetlands.

| PRJNA1196013 | ENA