Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The diversity of ammonia-oxidizing archaea in rhizosphere soils

PROVIDER: PRJNA1103381 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28874800_1.fastq.gz	Fastqsanger.gz
	SRR28874800_2.fastq.gz	Fastqsanger.gz
	SRR28874801_1.fastq.gz	Fastqsanger.gz
	SRR28874801_2.fastq.gz	Fastqsanger.gz
	SRR28874802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

Evaluation of Edaphic Microbial Ammonium Oxidizing Communities during a Yellow Potato Cycle Culture

Project description:This study evaluated the ammonium oxidizing communities (COA) associated with a potato crop (Solanum phureja) rhizosphere soil in the savannah of Bogotá (Colombia) by examining the presence and abundance of amoA enzyme genes and transcripts by qPCR and next-generation sequence analysis. amoA gene abundance could not be quantified by qPCR due to problems inherent in the primers; however, the melting curve analysis detected increased fluorescence for Bacterial communities but not for Archaeal communities. Transcriptome analysis by next-generation sequencing revealed that the majority of reads mapped to ammonium-oxidizing Archaea, suggesting that this activity is primarily governed by the microbial group of the Crenarchaeota phylum. In contrast,a lower number of reads mapped to ammonia-oxidizing bacteria.

2018-08-06 | GSE71824 | GEO

Nitrosopumilus maritimus SCM1: exponential phase control vs. 24 hours starvation vs. 24 hours recovery after starvation

Project description:Transcriptional profiling of marine ammonia oxidizing archaea Nitrosopumilus maritimus cells comparing exponential phase control cells with cells under 24 hours starvation and with cells under recovery after 24 hours starvation. Goal was to determine the effects of global transcriptional responses of N. maritimus cells under ammonia starvation and recovery conditions.

2017-11-01 | GSE103848 | GEO

Project description:The diversity of ammonia-oxidizing bacteria in rhizosphere soils

| PRJNA1103947 | ENA

Project description:Ammonia-oxidizing Archaea

| PRJNA673573 | ENA

freshwater sediment metagenome

Project description:ammonia-oxidizing archaea and ammonia-oxidizing bacteria sequencing

| PRJNA525546 | ENA

Nitrosopumilus maritimus SCM1

Project description:Autotrophic ammonia-oxidizing Archaea

| PRJNA19265 | ENA

Project description:H ammonia-oxidizing archaea