Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Hatchery Biomapping

PROVIDER: PRJNA1103390 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28777500_1.fastq.gz	Fastqsanger.gz
	SRR28777500_2.fastq.gz	Fastqsanger.gz
	SRR28777501_1.fastq.gz	Fastqsanger.gz
	SRR28777501_2.fastq.gz	Fastqsanger.gz
	SRR28777502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 368

Similar Datasets

Differential DNA Methylation in Somatic and Sperm cells of Hatchery versus Wild (Natural-Origin) Steelhead Trout Populations

Project description:The study was designed to investigate the impacts of hatchery spawning and rearing on steelhead trout (Oncorhynchus mykiss) versus the wild fish on a molecular level. Additionally, epigenetic differences between feeding practices that allow slow growth and fast growth hatchery trout were investigated. The sperm and RBC DNA both had a large number of DMRs when comparing the hatchery versus wild steelhead trout populations. Interestingly, the DMRs were cell type specific with negligible overlap. Slow growth compared to fast growth steelhead also had a larger number of DMRs in the RBC samples. Observations demonstrate a major epigenetic programming difference between the hatchery and wild fish populations, but negligible genetic differences. Therefore, hatchery conditions and growth rate can alter the epigenetic developmental programming of the steelhead trout, which may correlate to the phenotypic variations observed.

2020-05-24 | GSE145887 | GEO

Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss

2014-03-04 | GSE48844 | GEO

Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss

Project description:To identify gene expression differences between Oncorhynchus mykiss that migrate and those that reside in freshwater, we compared gill transcriptomes of fish prior to release from a hatchery with those of fish recaptured eight days post-release while all fish were still in freshwater, but some were captured next to the hatchery (non-migrants) and others were captured moving toward the ocean (migrants). The in-hatchery sampling method represents a highly similar environment for all the fish, and allows for the determination of activated genes predictive of smolting programs prior to release into streams. Morphological (e.g. color) and physiological (gill NaCl-ATPase activity) data were also obtained and correlated to gene expression differences to aid in predictions. Gill tissue was sampled for transcriptome profiling 13 days prior to two different releases from the hatchery (total sampled within hatchery n = 19). Samples were also taken eight days after the two releases near-hatchery (total in-creek n = 20) or migrating towards the ocean but still in freshwater (second release only n = 20). Finally, 48 days after the second release a final set of resident fish were sampled near the hatchery (n =10). In terms of time after release, the most parallel comparison is the second 8 day post release sample in-creek and migrating. Although all samples were obtained in freshwater, the samples with the most similar local environment are the pre-release samples.

2014-03-04 | E-GEOD-48844 | biostudies-arrayexpress

Washington state shellfish hatchery microbiome

Project description:Effluent from geoduck clam larval rearing tanks at two different pH (8.2 and 7.1) was collected at 4 time points (Days 1, 5, 8, and 12) over 12 days in a shellfish hatchery in Washington state, USA. The water was filtered to 0.2 microns to retain the bacterial fraction.

2021-04-21 | PXD020692 | Pride

Environment-driven reprogramming of gamete DNA methylation occurs during maturation and influences offspring fitness in salmon

Project description:We investigated whether exposure to a captive environment during maturation influenced gamete DNA methylation for wild Atlantic Salmon individuals. We then investigated whether these parental effects were detectable in an F1 generation reared in a common environment. We associated DNA methylation with growth and fitness-related phenotypes and demonstrated that intergenerational effects of hatchery exposure during maturation of the parental generation influence fitness-related methylation patterns in the F1 generation.

2020-11-26 | GSE162129 | GEO

Project description:Larval Hatchery Crasn 16s Amplicon Sequencing

| PRJNA744562 | ENA

Project description:Metatranscriptomics of shellfish hatchery intake water

| PRJNA738385 | ENA

Project description:Oyster hatchery microbiomes in response to probiotics

| PRJNA518081 | ENA

Project description:Hatchery and Wild Coho Within Generation Selection

| PRJNA986956 | ENA

sole microbiome in a hatchery life cycle

Project description:sole microbiome in a hatchery life cycle

| PRJEB55703 | ENA