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Rhizosphere metagenome

ABSTRACT: Rhizosphere metagenome Metagenome (Fungi) of Fagopyrum tataricum

PROVIDER: PRJNA1111720 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR29028300_1.fastq.gz	Fastqsanger.gz
	SRR29028300_2.fastq.gz	Fastqsanger.gz
	SRR29028301_1.fastq.gz	Fastqsanger.gz
	SRR29028301_2.fastq.gz	Fastqsanger.gz
	SRR29028302_1.fastq.gz	Fastqsanger.gz

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rhizosphere metagenome

Project description:Rhizosphere metagenome Metagenome (Bacteria) of Fagopyrum tataricum

| PRJNA1111721 | ENA

Changes of Gene expression in Tartary Buckwheat (Fagopyrum tataricum) under Frozen stress [RNA-Seq]

Project description:We performed a transcriptomics analysis in Tartary Buckwheat (Fagopyrum tataricum) in different freezing treatments

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Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

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Project description:The fungi in the rhizosphere of Eichhornia crassipes Metagenome

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Project description:Microbial communities in the rhizosphere make significant contributions to crop health and nutrient cycling. However, their ability to perform important biogeochemical processes remains uncharacterized. Important functional genes, which characterize the rhizosphere microbial community, were identified to understand metabolic capabilities in the maize rhizosphere using GeoChip 3.0-based functional gene array method.

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Project description:rhizosphere fungi Raw sequence reads

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Project description:Rhizosphere fungi Targeted loci environmental

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The function of FtMYBs in regulating the synthesis of flavonoids in Fagopyrum tartaricum under drought stress

Project description:Flavonoid is an important secondary metabolite, which makes an important contribution to plant resistance to abiotic stress and human health. Fagopyrum tataricum (Tartary buckwheat) itself contains more flavonoids, so exploring the regulation of Tartary buckwheat flavonoid synthesis can provide a solid theoretical basis for the cultivation of new Tartary buckwheat varieties with high nutrition. In this paper, we studied the role of FtMYBs in regulating the biosynthesis of flavonoids in Tartary buckwheat.

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Project description:Gene expression patterns of the plant colonizing bacterium,Pseudomonas putida KT2440 were evaluated as a function of growth in the Arabidopsis thaliana rhizosphere. Gene expression in rhizosphere grown P. putida cells was compared to gene expression in non-rhizosphere grown cells. Keywords: Gene expression

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