Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Ficus carica haplotype-phased genome cv Dottato

PROVIDER: PRJNA1117487 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR29142443_1.fastq.gz	Fastqsanger.gz
	SRR29142443_2.fastq.gz	Fastqsanger.gz
	SRR29160843_1.fastq.gz	Fastqsanger.gz
	SRR29160843_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 29

Similar Datasets

Ficus carica

Project description:Ficus carica haplotype-phased genome cv Dottato

| PRJNA1111048 | ENA

Ficus carica

Project description:Ficus carica haplotype-phased genome cv Dottato (alternative pseudo-haplotype)

| PRJNA1111063 | ENA

Project description:Ficus carica RNAseq

| PRJNA723733 | ENA

Ficus carica

Project description:Ficus carica overview

| PRJNA248023 | ENA

A phased genome of the highly heterozygous 'Texas' almond uncovers patterns of allele-specific expression linked to heterozygous transposon insertions

Project description:The vast majority of traditional almond varieties are self-incompatible and the level of variability of the species is very high, resulting in a highly heterozygosity genome. Therefore, information on the different haplotypes is particularly relevant to understand the genetic basis of trait variability in this species. However, although reference genomes for several almond varieties exist, none of them is phased and has genome information at the haplotype level. Here we present a phased assembly of genome of the almond cv. Texas. Our analysis shows that the “Texas” genome has a high degree of heterozygosity, both as SNPs, short indels, and structural variants (SV) level. Many of the SVs are due to heterozygous Transposable Element (TE) insertions, and in many cases they also contain genic sequences. In addition to the direct consequences of this genic variability on the presence/absence of genes, our results show that variants located close to genes tend to be associated with allele-specific gene expression (ASE), which highlights the importance of heterozygous SVs in almond.

2024-03-18 | GSE254853 | GEO

Ficus carica

Project description:Ficus carica Raw sequence reads

| PRJNA396644 | ENA

Ficus carica strain:Masui Dauphine

Project description:draft genome sequence of fig (Ficus carica)

| PRJDB15330 | ENA

Project description:PacBio sequencing of Ficus carica L. genome

| PRJNA565858 | ENA

Ficus carica

Project description:RNA-seq of Ficus carica latex

| PRJDB6367 | ENA