Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Carduus pycnocephalus

ABSTRACT: Carduus pycnocephalus overview

PROVIDER: PRJNA1120164 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR29420473_1.fastq.gz	Fastqsanger.gz
	SRR29420473_2.fastq.gz	Fastqsanger.gz
	SRR30989396_1.fastq.gz	Fastqsanger.gz
	SRR30989396_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Carduus pycnocephalus

Project description:Carduus pycnocephalus Genome sequencing and assembly

| PRJNA1172710 | ENA

Carduus pycnocephalus

Project description:Carduus pycnocephalus Transcriptome or Gene expression

| PRJNA1013290 | ENA

Carduus pycnocephalus

Project description:Carduus pycnocephalus principal haplotype genome sequencing

| PRJNA1120073 | ENA

Carduus pycnocephalus

Project description:Carduus pycnocephalus alternate haplotype genome sequencing

| PRJNA1120080 | ENA

Carduus crispus

Project description:Carduus crispus overview

| PRJNA1125096 | ENA

Project description:Carduus pycnocephalus Genomic Resources

| PRJNA986209 | ENA

daCarCris

Project description:Carduus crispus

| PRJEB76512 | ENA

Project description:Carduus sp. Genomic Resources

| PRJNA809719 | ENA

Project description:Acropora carduus associated bacteria

| PRJNA1034259 | ENA

African Mountain Thistles: Three New Genera in the <i>Carduus-Cirsium</i> Group.

Project description:The floras on the highest mountains in tropical eastern Africa are among the most unique floras in the world. Despite the exceptionally high concentration of endemic species, these floras remain understudied from an evolutionary point of view. In this study, we focus on the Carduus-Cirsium group (subtribe Carduinae) to unravel the evolutionary relationships of the species endemic to the tropical Afromontane and Afroalpine floras, aiming to improve the systematics of the group. We applied the Hyb-Seq approach using the Compositae1061 probe set on 190 samples (159 species), encompassing representatives of all genera of Carduinae. We used two recently developed pipelines that enabled the processing of raw sequence reads, identification of paralogous sequences and segregation into orthologous alignments. After the implementation of a missing data filter, we retained sequences from 986 nuclear loci and 177 plastid regions. Phylogenomic analyses were conducted using both concatenated and summary-coalescence methods. The resulting phylogenies were highly resolved and revealed three distinct evolutionary lineages consisting of the African species traditionally referred to as Carduus and Cirsium. Consequently, we propose the three new genera Afrocarduus, Afrocirsium and Nuriaea; the latter did notably not belong to the Carduus-Cirsium group. We detected some incongruences between the phylogenies based on concatenation vs. coalescence and on nuclear vs. plastid datasets, likely attributable to incomplete lineage sorting and/or hybridization.

| S-EPMC10489743 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data