Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Epicoccum sorghinum strain:NJC07 | cultivar:unknown maize cultivar

ABSTRACT: RNA-Seq of Epicoccum sorghinum NJC07 strain infecting maize

PROVIDER: PRJNA1120184 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR29843002_1.fastq.gz	Fastqsanger.gz
	SRR29843002_2.fastq.gz	Fastqsanger.gz
	SRR29843003_1.fastq.gz	Fastqsanger.gz
	SRR29843003_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 19

Similar Datasets

Epicoccum sorghinum

Project description:Epicoccum sorghinum overview

| PRJNA666481 | ENA

Epicoccum sorghinum strain:NJC07 | isolate:NJC07- | cultivar:unknown maize cultivar

Project description:Epicoccum sorghinum strain NJC07 genome

| PRJNA1120185 | ENA

Epicoccum sorghinum

Project description:Epicoccum sorghinum Raw sequence reads

| PRJNA665597 | ENA

Epicoccum sorghinum strain:USPMTOX48

Project description:Epicoccum sorghinum strain:USPMTOX48 Genome sequencing and assembly

| PRJNA314892 | ENA

Epicoccum sorghinum strain:SCAU-1

Project description:Epicoccum sorghinum strain:SCAU-1 Genome sequencing

| PRJNA1100412 | ENA

Epicoccum sorghinum strain:BS2-1

Project description:Epicoccum sorghinum strain:BS2-1 Genome sequencing and assembly

| PRJNA565496 | ENA

Epicoccum sorghinum strain:CGMCC3.20150

Project description:The sequence of long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) originating from tea (Camellia sinensis) leaves infected by Epicoccum sorghinum strain CGMCC3.20150.

| PRJNA799807 | ENA

Near-complete genome and infection transcriptomes of the maize leaf and sheath spot pathogen Epicoccum sorghinum.

Project description:Maize leaf and sheath spot disease caused by Epicoccum sorghinum is an emerging disease of maize in China. To disentangle the molecular pathogenesis, we sequenced the genome and infection transcriptomes of the E. sorghinum strain NJC07. The genome was sequenced on Oxford Nanopore GridION and Illumina NovaSeq 6000, producing a near-complete gapless nuclear genome assembly of 32.69 Mb at 285.20-fold depth, comprising 23 contigs (including 12 full-length chromosomes) with an N50 contig number/length of 6/1.66 Mb, and a complete mitochondrial genome assembly of 61.24 kb. The nuclear genome contains 11,779 protein-coding genes, including those predicted to encode potential virulence/pathogenicity factors, such as effectors and carbohydrate-active enzymes. Temporal RNA-Seq analysis revealed that 4,058 of the 11,779 genes were induced during maize infection, with a subset potentially implicated in fungal invasion and colonization of maize plants. Together, the genomic and transcriptomic data generated in the study provide a valuable foundation for the functional analysis of virulence and pathogenicity factors, offering critical insights into the molecular mechanisms driving E. sorghinum pathogenesis on maize.

| S-EPMC11825725 | biostudies-literature

Epicoccum

Project description:Epicoccum sp. overview

| PRJNA1181090 | ENA

Epicoccum latusicollum

Project description:Epicoccum latusicollum overview

| PRJNA891411 | ENA