Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Analysis of rhizosphere fungal communities of Korean fir (Abies koreana) living in Jirisan

ABSTRACT: Analysis of rhizosphere fungal communities of Korean fir (Abies koreana) living in Jirisan Metagenome

PROVIDER: PRJNA1120222 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNA-seq based in vivo transcriptomes of Korean fir (Abies koreana) with enhanced drought tolerance by Aureobasidium pullulans AK10

Project description:The conservation of the endangered Korean fir, Abies koreana, is of critical ecological importance. In our previous study, a yeast-like fungus identified as Aureobasidium pullulans AK10, was isolated and shown to enhance drought tolerance in A. koreana seedlings. In this study, the effectiveness of A. pullulans AK10 treatment in enhancing drought tolerance in A. koreana was confirmed. Furthermore, using transcriptome analysis, we compared A. koreana seedlings treated with A. pullulans AK10 to untreated controls under drought conditions to elucidate the molecular responses involved in increased drought tolerance.

2024-02-14 | GSE248350 | GEO

Analysis of rhizosphere fungal communities of Korean fir (Abies koreana) living in Jirisan

Project description:Analysis of rhizosphere fungal communities of Korean fir (Abies koreana) living in Jirisan

| PRJNA1120381 | ENA

Abies koreana

Project description:Abies koreana overview

| PRJNA615714 | ENA

RNA-seq based in vivo transcriptomes of Korean fir (Abies koreana) with enhanced drought tolerance by Aureobasidium pullulans AK10

Project description:RNA-seq based in vivo transcriptomes of Korean fir (Abies koreana) with enhanced drought tolerance by Aureobasidium pullulans AK10

| PRJNA1043572 | ENA

Bacteria

Project description:Analysis of rhizosphere bacterial communities of Korean fir (Abies koreana) living in Jirisan

| PRJNA1120210 | ENA

A comprehensive analysis of the Korean fir (Abies koreana) genes expressed under heat stress using transcriptome analysis.

Project description:Korean fir (Abies koreana), a rare species endemic to South Korea, is sensitive to climate change. Here, we used next-generation massively parallel sequencing technology and de novo transcriptome assembly to gain a comprehensive overview of the Korean fir transcriptome under heat stress. Sequencing control and heat-treated samples of Korean fir, we obtained more than 194,872,650 clean reads from each sample. After de novo assembly and quantitative assessment, 42,056 unigenes were generated with an average length of 908?bp. In total, 6,401 differentially expressed genes were detected, of which 2,958 were up-regulated and 3,443 down-regulated, between the heat-treated and control samples. A gene ontology analysis of these unigenes revealed heat-stress-related terms, such as "response to stimulus". Further, in depth analysis revealed 204 transcription factors and 189 Hsps as differentially expressed. Finally, 12 regulated candidate genes associated with heat stress were examined using quantitative real-time PCR (qRT-PCR). In this study, we present the first comprehensive characterisation of Korean fir subjected to heat stress using transcriptome analysis. It provides an important resource for future studies of Korean fir with the objective of identifying heat stress tolerant lines.

| S-EPMC6035224 | biostudies-literature

Project description:De novo transcriptome sequencing of Korean fir (Abies koreana)

| PRJNA391521 | ENA

Project description:De novo transcriptome sequencing of Korean fir (Abies koreana)

| PRJNA529263 | ENA

Abies (Fir)

Project description:Comparative transcriptomics across fir species (Christmas trees)

| PRJNA357112 | ENA

Project description:De novo transcriptome sequencing of Korean fir (Abies koreana)-2

| PRJNA435847 | ENA