Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Amaranthus palmeri genome sequencing and assembly (International Weed Genomics Consortium)

PROVIDER: PRJNA1120405 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29254893_subreads.fastq.gz	Fastqsanger.gz
	SRR29254894_subreads.fastq.gz	Fastqsanger.gz
	SRR29254895_1.fastq.gz	Fastqsanger.gz
	SRR29254895_2.fastq.gz	Fastqsanger.gz
	SRR30167488_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Amaranthus palmeri

Project description:Amaranthus palmeri genome sequencing and assembly (International Weed Genomics Consortium)

| PRJNA1119037 | ENA

Amaranthus palmeri

Project description:Amaranthus palmeri Genome sequencing and assembly - haplotype 1 (International Weed Genomics Consortium)

| PRJNA1120091 | ENA

Amaranthus palmeri

Project description:Amaranthus palmeri genome sequencing and assembly - haplotype 2 (International Weed Genomics Consortium)

| PRJNA1120095 | ENA

Amaranthus retroflexus isolate:LC-2024

Project description:Amaranthus retroflexus genome sequencing and assembly (International Weed Genomics Consortium)

| PRJNA1120177 | ENA

Amaranthus hybridus isolate:IWGC-03-2024

Project description:Amaranthus hybridus genome sequencing and assembly (International Weed Genomics Consortium)

| PRJNA1124241 | ENA

Project description:Amaranthus hybridus genome sequencing and assembly (International Weed Genomics Consortium)

| PRJNA1124249 | ENA

Amaranthus retroflexus

Project description:Amaranthus retroflexus genome sequencing and assembly (International Weed Genomics Consortium)

| PRJNA1120099 | ENA

Project description:Amaranthus retroflexus genome sequencing and assembly (International Weed Genomics Consortium)

| PRJNA1120413 | ENA

CYP72A1182 is involved in metabolic resistance evolution to tembotrione in Palmer amaranth

Project description:Evolution of metabolic herbicide resistance is a major issue for weed management. Few genes and regulatory mechanisms have been identified, particularly in dicotyledonous weed species. We identified putative causal genes and regulatory mechanism for tembotrione-resistance in Amaranthus palmeri. Cytochrome P450 candidate genes were identified through RNA-seq analysis. We validated their functions using heterologous expression in S. cerevisae. Promoters of the candidate P450 genes were analyzed. We performed QTL mapping to identify genomic regions associated with resistance. CYP72A1182 deactivated tembotrione. This gene had increased expression in other A. palmeri populations resistant to multiple herbicides, including-tembotrione. Resistant plants exhibited polymorphisms in the promoter of CYP72A1182. We identified QTLs linked to herbicide resistance, including one on chromosome 4 approximately 3 Mb away from CYP72A1182. CYP72A1182 is involved in tembotrione resistance in A. palmeri. Increased expression of this gene could be due to cis-regulation in the promoter, as well as trans-regulation from transcription factors; however further studies are in progress to test this hypothesis. The elucidation of regulatory genes is crucial for developing innovative weed management approaches and target-based novel molecules.

2025-02-14 | GSE243128 | GEO

Amaranthus palmeri

Project description:Amaranthus palmeri Genome sequencing and assembly

| PRJNA380417 | ENA