Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human stool

ABSTRACT: FEDEX Study Fecal Metagenomes

PROVIDER: PRJNA1121295 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29402200_1.fastq.gz	Fastqsanger.gz
	SRR29402200_2.fastq.gz	Fastqsanger.gz
	SRR29402201_1.fastq.gz	Fastqsanger.gz
	SRR29402201_2.fastq.gz	Fastqsanger.gz
	SRR29402202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 136

Similar Datasets

Project description:FECBUD Study Fecal Metagenomes

| PRJNA1071720 | ENA

Human stool

Project description:Fecal microbiota transplantations reconstitute gut fungal and viral microbiota in graft-versus-host disease

| PRJNA641975 | ENA

Human stool

Project description:Fecal microbiota transplantations reconstitute gut fungal and viral microbiota in graft-versus-host disease

| PRJNA642210 | ENA

Human Stool

Project description:Study of microbial diversity of human gut microbiome of arsenic exposed and unexposed population

| PRJNA820296 | ENA

Human stool samples

Project description:Study of preservation conditions on viability of human stool microbiota

| PRJNA634503 | ENA

Stool samples

Project description:IBS fecal microbiome

| PRJNA812699 | ENA

Project description:Fecal Metagenomes

| PRJNA725020 | ENA

human metagenome

Project description:MIND Study - Fecal Metagenomics

| PRJNA1086951 | ENA

Stool

Project description:Distinct fecal metagenomic signatures associated with pre-malignant colorectal adenomas

| PRJNA784939 | ENA

Vibrio cholerae in human vomitus vs. human stool

Project description:Understanding gene expression by bacteria during the actual course of human infection may provide important insights into microbial pathogenesis. In this study, we evaluated the transcriptional profile of Vibrio cholerae, the causative agent of cholera, in clinical specimens from cholera patients. We collected samples of human stool and vomitus that were positive by dark-field microscopy for abundant vibrios and used a microarray to compare gene expression in organisms recovered directly from the early and late stages of human infection. Our results reveal that V. cholerae gene expression within the human host environment differs from patterns defined in in vitro models of pathogenesis. tcpA, the major subunit of the essential V. cholerae colonization factor, was significantly more highly expressed in early compared with late infection; however, the genes encoding cholera toxin were not highly expressed in either phase of human infection. Furthermore, expression of the virulence regulators, toxRS and tcpPH, was uncoupled. Interestingly, the pattern of gene expression indicates that the human upper intestine may be a uniquely suitable environment for the transfer of genetic elements that are important in the evolution of pathogenic strains of V. cholerae. These findings provide a more detailed assessment of the transcriptome of V. cholerae in the human host than previous studies of organisms in stool alone and have implications for cholera control and the design of improved vaccines. Keywords: comparative gene expression analysis

2005-08-17 | GSE2775 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data