Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Atractylodes macrocephala

ABSTRACT: Atractylodes macrocephala Genome sequencing and assembly

PROVIDER: PRJNA1123906 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29423013_1.fastq.gz	Fastqsanger.gz
	SRR29423013_2.fastq.gz	Fastqsanger.gz
	SRR29423014_1.fastq.gz	Fastqsanger.gz
	SRR29423014_2.fastq.gz	Fastqsanger.gz
	SRR29423015_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Atractylodes macrocephala

Project description:Atractylodes macrocephala overview

| PRJNA659332 | ENA

Atractylodes macrocephala

Project description:Atractylodes macrocephala Transcriptome or Gene expression

| PRJNA419787 | ENA

Transcriptome Analysis Reveals the Biocontrol Mechanism of Endophytic Bacteria AM201, Rhodococcus sp., against Root Rot Disease of Atractylodes macrocephala

Project description:Transcriptome analysis was performed on the rhizome tissues of Atractylodes macrocephala under different treatments. The four treatments were: sterile water irrigation alone, FS root irrigation, FS and AM201 root irrigation, and FS combined with methyltobuzin (TM) root irrigation. And the differential genes between AM201 and FO groups were identified and compared, which helps to reveal the resistance mechanism of AM201 to Atractylodes macrocephala root rot disease

2024-01-30 | GSE254183 | GEO

Transcriptome analysis reveals the effect of Atractylodes macrocephala Koidz. on DSS-induced colitis in mice

Project description:Ulcerative colitis (UC), a subtype of inflammatory bowel disease (IBD), is characterized by chronic and relapsing mucosal inflammation initiating in the rectum and extending upward through part or the entire colon in a continuous fashion. Currently, 5-aminosalicylic acid agents, corticosteroids, immunomodulators, and surgery are the main treatments for UC, which are limited in clinical practice due to common nonadherence, serious adverse effects and heavy financial burden. Atractylodes macrocephala Koidz. (Baizhu) has been used for improving gastrointestinal function and treating digestive disorders for thousands of years, and is currently one of the most frequently used traditional Chinese medicines for the treatment of UC. The purpose of this study was to evaluate the effect and underlying mechanism of polysaccharide from Atractylodes macrocephala Koidz. (PAMK) on UC based on a mouse model of dextran sodium sulfate (DSS)-induced colitis. To investigate the mechanism of therapeutic effect of PAMK on colitis, we performed the microarray analysis of colonic tissues in Control, DSS and DSS+PAMK groups. The results indicated that the beneficial effect of PAMK on DSS-induced colitis may rely on the regulation of the immune response.

2022-10-14 | GSE211359 | GEO

Transcriptomics coupled with Metabonomics for elucidating differences between the components in different varieties Atractylodes

Project description:Atractylodes macrocephala is a traditional Chinese medicine in China. It is widely used in clinic and the market demand is great. The quality difference between A. chinensis(Bunge) Koidz and A. japonica Koidz.ex Kitam is great, which seriously affects its clinical curative effect. Determination of Atractylosin by High-performance liquid chromatography. Transcriptomics coupled with Metabonomics for elucidating differences between the components in A. chinensis(Bunge) Koidz and A. japonica Koidz.ex Kitam. It was found that ACS, ACC, PAL and NOS were the key genes and metabolites related to the synthesis of atractylodes macrocephala. The decrease of salicylic acid content in A. chinensis(Bunge) Koidz may lead to the decrease of its ability to mediate the elicitor of endophytic fungi, resulting in the down-regulation of the expression of TGAL4 transcription factor and the up-regulation of DOGL3 transcription factor in A. chinensis(Bunge) Koidz cells, which may affect the accumulation of Atractylosin. The study above provides a theoretical basis for elucidating the biosynthesis pathway of atractylosin in A. chinensis(Bunge) Koidz.

2024-09-28 | GSE278290 | GEO

Atractylodes lancea

Project description:Atractylodes lancea Genome sequencing and assembly

| PRJNA728815 | ENA

Atractylodes lancea isolate:Atractylodes | cultivar:lancea

Project description:Atractylodes lancea isolate:Atractylodes | cultivar:lancea Genome sequencing

| PRJNA755879 | ENA

Atractylodes macrocephala

Project description:One kilo medicine plants genome plan

| PRJNA556560 | ENA

Petroica macrocephala

Project description:Petroica macrocephala overview