Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: tNGS data

PROVIDER: PRJNA1124340 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29448900.fastq.gz	Fastqsanger.gz
	SRR29449000.fastq.gz	Fastqsanger.gz
	SRR29449100.fastq.gz	Fastqsanger.gz
	SRR29449200.fastq.gz	Fastqsanger.gz
	SRR29448901.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 336

Similar Datasets

Project description:tNGS

| PRJNA1047270 | ENA

L. pneumophilia Infection Diagnosed by tNGS in A Lady with Lymphadenopathy

Project description:L. pneumophilia Infection Diagnosed by tNGS

| PRJEB56071 | ENA

L. pneumophilia Infection Diagnosed by tNGS in A Lady with Lymphadenopathy

Project description:L. pneumophilia Infection Diagnosed by tNGS

| PRJEB56187 | ENA

ERP123456

Project description:L. pneumophilia Infection Diagnosed by tNGS

| PRJEB56147 | ENA

Project description:Primary cutaneous DLBCL leg types cohort LUMC tNGS

| PRJNA629460 | ENA

Anisogramma anomala

Project description:tNGS shares the same consistency with mNGS and has more benefits

| PRJNA1058802 | ENA

Project description:Nanopore tNGS Using The ONT custom TB-DR sequencing assay for Predicting Drug-Resistant Tuberculosis

| PRJNA1196685 | ENA

Identification of early disease progression in ALK-rearranged lung cancer using circulating tumor DNA analysis (hipo K34R)

Project description:We utilized 343 longitudinal plasma DNA samples from 43 ALK+ NSCLC patients receiving targeted ALK therapy to evaluate ctDNA levels based on matched panel-based targeted next generation sequencing (tNGS) and untargeted shallow whole genome sequencing (sWGS). We measured the mean variant allele frequency (VAFmean) of genetic alterations called by tNGS and applied the t-MAD score as surrogate for the global copy number changes reflected by ctDNA. Both NGS metrics were assessed as indicators of disease progression, and more importantly, early molecular progression. Systematic establishment of thresholds in VAFmean and t-MAD changes indicating clinical progression was performed in our study cohort.

| EGAS00001005327 | EGA

Project description:Clinical applications of targeted next-generation sequencing (tNGS) in bilateral lung infection with ineffective initial antimicrobial treatment

| PRJNA991503 | ENA

Spontaneous mutations in the single TTN gene represent high tumor mutation burden

Project description:Tumor mutation burden (TMB) is an emerging biomarker, whose calculation requires targeted sequencing of many genes. We investigated if the measurement of mutation counts within a single gene is representative of TMB. Whole exome sequencing (WES) data from the pan-cancer cohort (n=10,224) of TCGA, and targeted sequencing (tNGS) and TTN gene sequencing from 24 colorectal cancer samples (AMC cohort) were analyzed.

| EGAS00001004009 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data