Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Listeria isolates from Ecuador

PROVIDER: PRJNA1125350 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR29451335_1.fastq.gz	Fastqsanger.gz
	SRR29451335_2.fastq.gz	Fastqsanger.gz
	SRR29451336_1.fastq.gz	Fastqsanger.gz
	SRR29451336_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 129

Similar Datasets

Listeria monocytogenes, a silent foodborne pathogen in Ecuador.

Project description:Listeria monocytogenes, a silent foodborne pathogen in Ecuador.

| PRJEB48671 | ENA

Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Project description:Hispanic/Latino populations possess a complex genetic structure that reflects recent admixture among and potentially ancient substructure within Native American, European, and West African source populations. Here, we quantify genome-wide patterns of SNP and haplotype variation among 100 individuals with ancestry from Ecuador, Colombia, Puerto Rico, and the Dominican Republic genotyped using Illumina technology.

2010-04-08 | GSE21248 | GEO

Transcriptomic analysis of biofilm formation in persistent and transient Listeria monocytogenes from the retail deli environment

Project description:Persistence of Listeria monocytogenes in retail deli environments is a serious food safety issue, potentially leading to cross-contamination of ready-to-eat foods such as deli meats, salads, and cheeses. We previously discovered strong evidence of L. monocytogenes persistence in delis across multiple states. We hypothesized that this was correlated with isolates’ innate characteristics, such as biofilm-forming capacity or gene differences.We further chose four isolates for RNA-sequencing analysis and compared their global biofilm transcriptome to their global planktonic transcriptome. Analysis of biofilm vs planktonic gene expression did not show the expected differences in gene expression patterns. Overall, L. monocytogenes persistence in the deli environment is likely a matter of poor sanitation and/or facility design, rather than isolates’ biofilm-forming capacity, sanitizer tolerance, or genomic content

2021-06-11 | GSE176617 | GEO

Project description:Listeria isolates from Human source

| PRJNA951529 | ENA

Project description:WGS for Listeria innocua isolates

| PRJNA1085856 | ENA

Klebsiella pneumoniae

Project description:Whole genome sequencing of Klebsiella pneumoniae MDR isolates from Ecuador

| PRJNA956653 | ENA

Project description:2017 Ecuador

| PRJNA633714 | ENA

Project description:South Fork Broad River Listeria isolates

| PRJNA605751 | ENA