Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Full-length transcriptome analysis of the bloom-forming dinoflagellate Scrippsiella acuminata using single-molecule real-time sequencing

PROVIDER: PRJNA1127753 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29547804_subreads.fastq.gz	Fastqsanger.gz
	SRR29547805_subreads.fastq.gz	Fastqsanger.gz
	SRR29547806_subreads.fastq.gz	Fastqsanger.gz
	SRR29547807_subreads.fastq.gz	Fastqsanger.gz
	SRR29547808_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Full-length transcriptome of the bloom-forming dinoflagellate Akashiwo sanguinea by single-molecule real-time sequencing

| PRJNA827604 | ENA

Heterocapsa triquetra

Project description:Bloom-forming dinoflagellate

| PRJNA12802 | ENA

Project description:Full-length transcriptome sequencing of Heliocidaris crassispina using PacBio single-molecule real-time

| PRJNA767828 | ENA

Multi-omics analysis reveals concerted molecular responses to heat stress in a “red tide” dinoflagellate

Project description:Harmful algal blooms are induced largely by nutrient enrichment common in warm waters. An increasingly frequent phenomenon is the “red tide”: blooms of dinoflagellate microalgae that accumulate toxins lethal to other organisms in high doses. Here, we present the de novo assembled genome (~4.75 Gbp) of Prorocentrum cordatum, a globally abundant, bloom-forming dinoflagellate, and the associated transcriptome, proteome, and metabolome data from axenic cultures to elucidate the microalgal molecular responses to heat stress. We discovered, in a high-G+C genome with long introns and extensive genetic duplication, a complementary mechanism between RNA editing and exon usage that regulates dynamic expression and functional diversity of genes and proteins, and metabolic profiles that reflect reduced capacities in photosynthesis, central metabolism, and protein synthesis. These results based on multi-omics evidence demonstrate the genomic hallmark of a bloom-forming dinoflagellate, and how the complex gene structures combined with multi-level transcriptional regulation underpin concerted heat-stress responses.

2023-10-18 | PXD046193 | Pride

Project description:Full-length transcriptome analysis of ichthyotoxic harmful alga Heterosigma akashiwo (Raphidophyceae) by single-molecule real-time sequencing

| PRJNA902675 | ENA

Illuminating the key biological processes during the blooming period of a marine dinoflagellate by metaproteomics

Project description:Dinoflagellate blooms are natural phenomena that have drawn global attention due to their huge negative impacts on marine ecosystems, mariculture and human health. Although the understanding of dinoflagellate blooms has been significantly improved over the past half century, little is known about the underlying mechanisms sustaining the high biomass growth rate during the bloom period which is paradoxically characterized by low dissolved CO2 and inorganic nutrients. Here, we compared the metaproteomes of non-bloom, mid-bloom and late-bloom cells of a marine dinoflagellate Prorocentrum donghaiense in the coastal East China Sea, to understand the underlying mechanisms sustaining high biomass growth rate under the typically low CO2 and inorganic nutrient conditions.

2021-01-21 | PXD018006 | Pride

Project description:Transcriptome analysis of the bloom-forming dinoflagellate Prorocentrum donghaiense

| PRJNA1066613 | ENA

Project description:Single Molecule Real-Time sequencing

| PRJNA745380 | ENA

Project description:Full-length transcriptome sequencing , gene function annotation and SSR prediction of Clematis calyx based on single-molecule real-time (SMRT) sequencing platform.

| PRJNA1108023 | ENA

BDN_BKE

Project description:Transcriptomes of Amoebophrya sp. A120 infecting Scrippsiella acuminata

| PRJEB27019 | ENA