Thalassia testudinum
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ABSTRACT:
PROVIDER: PRJNA1130510 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Ammonia-oxidizing archaeal (AOA) amoA diversity and relative abundance in Gulf of Mexico sediments (0-2 cm) were investigated using a functional gene microarray; a two color array with a universal internal standard
2013-03-01 | GSE42286 | GEO
Project description:Seagrass beds contribute to oceanic carbonate lime mud production by providing a habitat for a wide variety of calcifying organisms and acting as efficient sediment traps. Here we provide evidence for the direct implication of Thalassia testudinum in the precipitation of aragonite needles. The crystals are located internally in the cell walls, and as external deposits on the blade, and are similar in size and shape to the aragonite needles reported for modern tropical carbonate factories. Seagrass calcification is a biological, light-enhanced process controlled by the leaf, and estimates of seagrass annual carbonate production in a Caribbean reef lagoon are as significant as values reported for Halimeda incrassata. Thus, we conclude that seagrass calcification is another biological source for the aragonite lime mud deposits found in tropical banks, and that tropical seagrass habitats may play a more important role in the oceanic carbon cycle than previously considered.
| S-EPMC4050277 | biostudies-literature
Project description:Assessing seagrass meadows fish diversity using eDNA
| PRJNA777404 | ENA
Project description:Many marine species have widespread geographic ranges derived from their evolutionary and ecological history particularly their modes of dispersal. Seagrass (marine angiosperm) species have ranges that are unusually widespread, which is not unexpected following recent reviews of reproductive strategies demonstrating the potential for long-distance dispersal combined with longevity through clonality. An exemplar of these dual biological features is turtle grass (Thalassia testudinum) which is an ecologically important species throughout the tropical Atlantic region. Turtle grass has been documented to have long-distance dispersal via floating fruits and also extreme clonality and longevity. We hypothesize that across its range, Thalassia testudinum will have very limited regional population structure due to these characteristics and under typical models of population structure would expect to detect high levels of genetic connectivity. There are very few studies of range-wide genetic connectivity documented for seagrasses or other sessile marine species. This study presents a population genetic dataset that represents a geographic area exceeding 14,000 km2. Population genetic diversity was evaluated from 32 Thalassia testudinum populations sampled across the Caribbean and Gulf of Mexico. Genotypes were based on nine microsatellites, and haplotypes were based on chloroplast DNA sequences. Very limited phylogeographic signal from cpDNA reduced the potential comparative analyses possible. Multiple analytical clustering approaches on population genetic data revealed two significant genetic partitions: (a) the Caribbean and (b) the Gulf of Mexico. Genetic diversity was high (H E = 0.641), and isolation by distance was significant; gene flow and migration estimates across the entire range were however modest, we suggest that the frequency of successful recruitment across the range is uncommon. Thalassia testudinum maintains genetic diversity across its entire distribution range. The genetic split may be explained by genetic drift during recolonization from refugia following relatively recent reduction in available habitat such as the last glacial maxima.
| S-EPMC6194253 | biostudies-literature
Project description:Ammonia-oxidizing archaeal (AOA) amoA diversity and relative abundance in Gulf of Mexico sediments (0-2 cm) were investigated using a functional gene microarray; a two color array with a universal internal standard Two color array (cy3 and cy5): the universal standard 20 bp oligo (fluoresced with cy5) is printed to the slide with a 70-mer. Environmental DNA sequences (fluoresced with Cy3) within 15% of the 70-mer will bind to it. Signal is the cy3/cy5. Up to four arrays per sample, with two biological replicates made into two targets, each run on duplicate arrays.
2013-03-01 | E-GEOD-42286 | biostudies-arrayexpress
Project description:This study was undertaken to determine the relationships between the biomass, morphometry, and density of short shoots (SS) of the tropical seagrass Thalassia testudinum and the physical-environmental forcing in the region. Seasonal sampling surveys were undertaken four times in Bahia de la Ascension, a shallow estuary in the western Mexican Caribbean, to measure plant morphology and environmental variables. The estuary has a fresh water-influenced inner bay, a large central basin and a marine zone featuring a barrier reef at the seaward margin. Leaf size was positively correlated with increasing salinity, but total biomass was not, being similar across most of the sites. Aboveground biomass exhibited seasonal differences in dry and rainy seasons along the bay, most markedly in the brackish inner bay where an abrupt decline in biomass coincided with the rainy season. The relationship between nutrients and biomass indicates that the aboveground/belowground biomass ratio increases as nutrient availability increases. Areal cover was inversely correlated with SS density during both dry and rainy seasons. Maximum SS recruitment coincided with the rainy season. Peaks in SS density were recorded in the freshwater-influenced inner bay during an ENSO cold phase in 2007 ("La Niña") which is associated with a wetter dry season and following a strong storm (Hurricane Dean). The onset of the rainy season influences both shoot density and T. testudinum biomass by controlling the freshwater input to the bay and thus, the system's salinity gradient and external nutrients supply from the coastal wetland.
| S-EPMC5063390 | biostudies-literature
Project description:Combined effects of an Oil Spill, surfactant and solar radiation on surface marine microbiome in the Gulf of Mexico
2023-12-21 | PXD048022 |
Project description:Target DNA from the uncultivable Codakia orbicularis endosymbiont was PCR amplified from sea-grass sediment. To confirm that such amplifications originated from intact bacterial cells rather than free DNA, whole-cell hybridization (fluorescence in situ hybridization technique) with the specific probe Symco2 was performed along with experimental infection of aposymbiotic juveniles placed in contact with the same sediment. Taken together, the data demonstrate that the sulfide-oxidizing gill endosymbiont of Codakia orbicularis is present in the environment as a free-living uncultivable form.
| S-EPMC201202 | biostudies-literature