Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomic sequencing undiagnosed patient samples

PROVIDER: PRJNA1131364 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29741325.fastq.gz	Fastqsanger.gz
	SRR29741325_1.fastq.gz	Fastqsanger.gz
	SRR29741325_2.fastq.gz	Fastqsanger.gz
	SRR29741326.fastq.gz	Fastqsanger.gz
	SRR29741326_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Metagenomic sequencing of human patient samples

| PRJNA1126083 | ENA

E-GEOD-24283

Project description:Deep transcriptional sequencing analysis of human prostate adenocarcinoma and reference samples

2025-01-24 | E-GEOD-24283 | ExpressionAtlas

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): from reads to pathogens. A specific and exhaustive pipeline for handling metagenomic shotgun sequencing data.

Project description:Next-Generation-Sequencing (NGS) technologies have led to important improvement in the detection of new or unrecognized infective agents, related to infectious diseases. In this context, NGS high-throughput technology can be used to achieve a comprehensive and unbiased sequencing of the nucleic acids present in a clinical sample (i.e. tissues). Metagenomic shotgun sequencing has emerged as powerful high-throughput approaches to analyze and survey microbial composition in the field of infectious diseases. By directly sequencing millions of nucleic acid molecules in a sample and matching the sequences to those available in databases, pathogens of an infectious disease can be inferred. Despite the large amount of metagenomic shotgun data produced, there is a lack of a comprehensive and easy-use pipeline for data analysis that avoid annoying and complicated bioinformatics steps. Here we present HOME-BIO, a modular and exhaustive pipeline for analysis of biological entity estimation, specific designed for shotgun sequenced clinical samples. HOME-BIO analysis provides comprehensive taxonomy classification by querying different source database and carry out main steps in metagenomic investigation. HOME-BIO is a powerful tool in the hand of biologist without computational experience, which are focused on metagenomic analysis. Its easy-to-use intrinsic characteristic allows users to simply import raw sequenced reads file and obtain taxonomy profile of their samples.

2021-07-26 | E-MTAB-9189 | biostudies-arrayexpress

E-TABM-1029

Project description:Transcription profiling by array of human cytogenetically normal acute myeloid leukemia patient samples with FLT3 internal tandem duplications

2025-01-16 | E-TABM-1029 | ExpressionAtlas

MuSt multiomics - Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes

Project description:Multiomics of faecal samples collected from individuals in families with multiple cases of type 1 diabetes mellitus (T1DM) over 3 or 4 months. Metagenomic and metatranscriptomic sequencing and metaproteomics were carried out, as well as whole human genome sequencing. Phenotypic data is available.

2016-08-22 | PXD003791 | Pride

E-TABM-1020

Project description:Transcription profiling by array of human cytogenetically normal acute myeloid leukemia patient samples with and without Wilms tumor 1 gene mutations

2025-01-16 | E-TABM-1020 | ExpressionAtlas

E-MTAB-11671

Project description:RNA-Sequencing of whole blood samples from children with a range of acute febrile illnesses

2025-01-23 | E-MTAB-11671 | ExpressionAtlas

E-GEOD-81361

Project description:Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO)

2017-02-16 | E-GEOD-81361 | ExpressionAtlas

E-MTAB-4732

Project description:3'-end targeted sequencing of 6 control and 6 TDP-43 KD samples in HEK293

2025-01-23 | E-MTAB-4732 | ExpressionAtlas

IMPACT2_phageome

Project description:Metagenomic and viromic sequencing of ICU patient stool samples