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Paphiopedilum emersonii

ABSTRACT: Paphiopedilum emersonii Transcriptome or Gene expression

PROVIDER: PRJNA1134374 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR30542731_1.fastq.gz	Fastqsanger.gz
	SRR30542731_2.fastq.gz	Fastqsanger.gz
	SRR30542732_1.fastq.gz	Fastqsanger.gz
	SRR30542732_2.fastq.gz	Fastqsanger.gz
	SRR30542733_1.fastq.gz	Fastqsanger.gz

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Paphiopedilum emersonii

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Gene expression in response to stresses in the Chytridiomycete Blastocladiella emersonii.

Project description:We explored transcriptional responses of the chytridiomycete Blastocladiella emersonii to some stress environmental conditions. Three distinct cDNA libraries constructed from mRNAs extracted from cells submitted to heat shock and different cadmium concentrations (50 and 100 mM) were sequenced and generated 6,350 high-quality EST sequences. These ESTs were assembled into 2,326 unigenes, being 51% of them not previously described in B. emersonii and consequently represent a worthy contribution of this work. We assigned to approximately 59% of the unigenes an orthologue in other organism, whereas 41% remained without a putative identification. Using the transcriptome data of B. emersonii we constructed a microarray slide containing 3,773 different cDNAs which comprise many biological processes of this fungus and analyzed its expression pattern in response to cadmium and heat shock. Through cDNA microarray assays we observed that 3,3% and 5,1% of the genes present in B. emersonii microarray slide were up-regulated in response to heat shock and cadmium, respectively. The main categories to which belong these genes were protein folding and proteolysis, proteins with antioxidant properties, cellular transport, carbohydrate and amino acid metabolism. Interestingly, in response to cadmium stress, B. emersonii induced six different genes codifying Glutathione S-transferases and six Metacaspases, as well as several proteins from sulfur amino acid metabolism. Keywords: stress response; heavy metal stress response; heat shock response

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Blastocladiella emersonii

Project description:Gene expression in response to stresses in the Chytridiomycete Blastocladiella emersonii.

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