Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Normal 16s and ITS of ginseng (fermented) soil

ABSTRACT: normal 16s and ITS of ginseng (fermented) soil Raw sequence reads

PROVIDER: PRJNA1136133 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29841864_1.fastq.gz	Fastqsanger.gz
	SRR29841864_2.fastq.gz	Fastqsanger.gz
	SRR29841865_1.fastq.gz	Fastqsanger.gz
	SRR29841865_2.fastq.gz	Fastqsanger.gz
	SRR29841866_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

normal 16s-seq of soil

Project description:normal 16s-seq of soil Raw sequence reads

| PRJNA871984 | ENA

Label-free Quantitative Proteomic analysis of drought-responsive proteins in Panax ginseng Meyer

Project description:Korean ginseng (Panax ginseng Meyer) has long been cultivated as an important medicinal plant. Drought results from the moderate water loss, which primarily impairs the growth of ginseng and reduction of yield loss. However, basis of biological clues to understanding the accurate mechanisms related to drought stress in proteome level are still elusive. Therefore, we carried out label-free quantitative proteomic analysis using ginseng roots subjected to drought stress which was grown at less than 10% soil moisture for two weeks, compared with normal ginseng which was grown at 25% soil moisture. The acquired proteins were carried out label-free proteomic analysis using LC-MS/MS. This approach led to the identification of total 2,471 proteins, and out of 195 proteins showed significant modulation. Functional classification revealed that proteins related to secondary metabolites, calcium signaling, and photosynthesis were enriched in control sample (cluster_1), while proteins associated with stress responsive, redox, electron transport, and protein synthesis were mainly dominated in cluster_2 (drought stress condition). Taken together, our results provided an overview of the drought-induced proteomic changes in ginseng root, and it is correlated with physiological changes, contributing to reveal potential marker at proteome level in ginseng.

2023-09-21 | PXD028602 | Pride

Panax ginseng Soil

Project description:Panax ginseng Soil Raw sequence reads

| PRJNA1103248 | ENA

Panax ginseng Soil

Project description:Panax ginseng Soil Raw sequence reads

| PRJNA1103357 | ENA

soil from ginseng cultivation

Project description:soil from ginseng cultivation Metagenome

| PRJNA704521 | ENA

A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria

2010-01-01 | GSE18711 | GEO

Bacteria metagenome (16S) from fermented Hakarl

Project description:Bacteria metagenome (16S) from fermented Hakarl Metagenome

| PRJNA481233 | ENA

A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria

Project description:Investigation of the phylogenetic diversity of Acidobacteria taxa using PCR amplicons from positive control 16S rRNA templates and total genomic DNA extracted from soil and a soil clay fraction A ten chip study using PCR amplicons from cloned 16S rRNA genes and from diverse soil 16S rRNAs, with PCR primers specific to the Division Acidobacteria. Each chip measures the signal from 42,194 probes (in triplicate) targeting Acidobacteria division, subdivision, and subclades as well as other bacterial phyla. All samples except one (GSM464591) include 2.5 M betaine in the hybridization buffer. Pair files lost due to a computer crash.

2010-06-24 | E-GEOD-18711 | biostudies-arrayexpress

Panax ginseng Soil (Fe3O4)

Project description:Panax ginseng Soil (Fe3O4) Raw sequence reads

| PRJNA1136695 | ENA

Panax ginseng soil bacteria

Project description:Panax ginseng soil bacteria Raw sequence reads

| PRJNA886407 | ENA